Hb_104362_010

Information

Type -
Description -
Location Contig104362: 12-337
Sequence    

Annotation

kegg
ID pop:POPTR_0247s002302
description hypothetical protein
nr
ID XP_006388286.1
description hypothetical protein POPTR_0247s002302g, partial [Populus trichocarpa]
swissprot
ID Q9LFV3
description Probable leucine-rich repeat receptor-like serine/threonine-protein kinase At5g15730 OS=Arabidopsis thaliana GN=At5g15730 PE=2 SV=1
trembl
ID U7DW16
description Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0247s002302g PE=3 SV=1
Gene Ontology
ID GO:0004672
description probable l-type lectin-domain containing receptor kinase isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_104362_010 0.0 - - hypothetical protein POPTR_0247s002302g, partial [Populus trichocarpa]
2 Hb_001428_010 0.1472202904 - - PREDICTED: transcription factor PRE1-like [Jatropha curcas]
3 Hb_011609_200 0.1477312815 - - PREDICTED: ultraviolet-B receptor UVR8-like isoform X3 [Populus euphratica]
4 Hb_000156_150 0.1487292797 - - hypothetical protein JCGZ_04603 [Jatropha curcas]
5 Hb_003494_100 0.1623158516 transcription factor TF Family: zf-HD Mini zinc finger 2 isoform 1 [Theobroma cacao]
6 Hb_034858_010 0.1639229551 - - -
7 Hb_004317_020 0.169292595 - - PREDICTED: protein CHROMOSOME TRANSMISSION FIDELITY 7-like [Malus domestica]
8 Hb_000296_030 0.1705970277 - - PREDICTED: uncharacterized protein LOC105636578 [Jatropha curcas]
9 Hb_000566_060 0.1711658738 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000740_140 0.1728802567 transcription factor TF Family: OFP PREDICTED: probable transcription repressor OFP9 [Jatropha curcas]
11 Hb_005348_020 0.1806109359 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000926_240 0.1884078531 - - hypothetical protein PRUPE_ppb018041mg [Prunus persica]
13 Hb_008066_020 0.1902659526 - - conserved hypothetical protein [Ricinus communis]
14 Hb_093084_040 0.1906615676 transcription factor TF Family: LOB hypothetical protein POPTR_0015s09370g [Populus trichocarpa]
15 Hb_010068_010 0.1918537584 - - PREDICTED: uncharacterized protein LOC105633273 [Jatropha curcas]
16 Hb_000269_050 0.1923080551 - - PREDICTED: beta-glucosidase 12-like [Gossypium raimondii]
17 Hb_005914_220 0.1924962887 transcription factor TF Family: Orphans conserved hypothetical protein [Ricinus communis]
18 Hb_000270_590 0.1942005723 - - hypothetical protein POPTR_0012s07820g [Populus trichocarpa]
19 Hb_000622_140 0.1943835522 - - conserved hypothetical protein [Ricinus communis]
20 Hb_002368_120 0.1989344444 - - hypothetical protein VITISV_033181 [Vitis vinifera]

Gene co-expression network

sample Hb_104362_010 Hb_104362_010 Hb_001428_010 Hb_001428_010 Hb_104362_010--Hb_001428_010 Hb_011609_200 Hb_011609_200 Hb_104362_010--Hb_011609_200 Hb_000156_150 Hb_000156_150 Hb_104362_010--Hb_000156_150 Hb_003494_100 Hb_003494_100 Hb_104362_010--Hb_003494_100 Hb_034858_010 Hb_034858_010 Hb_104362_010--Hb_034858_010 Hb_004317_020 Hb_004317_020 Hb_104362_010--Hb_004317_020 Hb_001428_010--Hb_000156_150 Hb_006012_030 Hb_006012_030 Hb_001428_010--Hb_006012_030 Hb_000099_110 Hb_000099_110 Hb_001428_010--Hb_000099_110 Hb_001428_010--Hb_011609_200 Hb_000270_590 Hb_000270_590 Hb_001428_010--Hb_000270_590 Hb_160479_010 Hb_160479_010 Hb_011609_200--Hb_160479_010 Hb_033691_010 Hb_033691_010 Hb_011609_200--Hb_033691_010 Hb_010068_010 Hb_010068_010 Hb_011609_200--Hb_010068_010 Hb_011609_200--Hb_000156_150 Hb_000926_240 Hb_000926_240 Hb_011609_200--Hb_000926_240 Hb_000156_150--Hb_006012_030 Hb_002235_330 Hb_002235_330 Hb_000156_150--Hb_002235_330 Hb_000156_150--Hb_000270_590 Hb_002368_120 Hb_002368_120 Hb_003494_100--Hb_002368_120 Hb_154146_010 Hb_154146_010 Hb_003494_100--Hb_154146_010 Hb_001304_150 Hb_001304_150 Hb_003494_100--Hb_001304_150 Hb_000313_240 Hb_000313_240 Hb_003494_100--Hb_000313_240 Hb_012090_010 Hb_012090_010 Hb_003494_100--Hb_012090_010 Hb_000331_600 Hb_000331_600 Hb_003494_100--Hb_000331_600 Hb_034858_010--Hb_004317_020 Hb_000566_060 Hb_000566_060 Hb_034858_010--Hb_000566_060 Hb_000740_140 Hb_000740_140 Hb_034858_010--Hb_000740_140 Hb_005348_020 Hb_005348_020 Hb_034858_010--Hb_005348_020 Hb_034858_010--Hb_000926_240 Hb_034858_010--Hb_010068_010 Hb_004317_020--Hb_000566_060 Hb_004317_020--Hb_010068_010 Hb_004317_020--Hb_000926_240 Hb_004317_020--Hb_160479_010 Hb_051900_020 Hb_051900_020 Hb_004317_020--Hb_051900_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.149271 2.82336 0 0.168901
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.152738 0

CAGE analysis