Hb_006012_030

Information

Type -
Description -
Location Contig6012: 69855-79925
Sequence    

Annotation

kegg
ID pop:POPTR_0008s02380g
description POPTRDRAFT_563606; hypothetical protein
nr
ID XP_002311025.2
description hypothetical protein POPTR_0008s02380g [Populus trichocarpa]
swissprot
ID Q9C7A2
description Ankyrin repeat-containing protein At3g12360 OS=Arabidopsis thaliana GN=At3g12360 PE=2 SV=1
trembl
ID B9HL09
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s02380g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50584: 70372-70860 , PASA_asmbl_50585: 70895-73239
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006012_030 0.0 - - hypothetical protein POPTR_0008s02380g [Populus trichocarpa]
2 Hb_012799_010 0.1053263692 - - PREDICTED: heavy metal-associated isoprenylated plant protein 26 isoform X2 [Jatropha curcas]
3 Hb_000099_110 0.1161628666 - - PREDICTED: disease resistance response protein 206-like [Jatropha curcas]
4 Hb_012545_020 0.1246336005 - - PREDICTED: uncharacterized protein LOC105633903 [Jatropha curcas]
5 Hb_001396_270 0.1251977084 - - 4-coumarate--CoA ligase family protein [Populus trichocarpa]
6 Hb_001428_010 0.1275746644 - - PREDICTED: transcription factor PRE1-like [Jatropha curcas]
7 Hb_000277_040 0.1296170721 - - -
8 Hb_000270_590 0.1318138182 - - hypothetical protein POPTR_0012s07820g [Populus trichocarpa]
9 Hb_097213_010 0.1348256575 - - PREDICTED: cytochrome P450 714C2-like [Populus euphratica]
10 Hb_010812_080 0.1356924739 - - PREDICTED: methylesterase 17 [Jatropha curcas]
11 Hb_000381_140 0.1364336172 - - PREDICTED: S-type anion channel SLAH4-like [Jatropha curcas]
12 Hb_002028_250 0.1401696589 - - Alpha-aminoadipic semialdehyde synthase, mitochondrial [Crassostrea gigas]
13 Hb_101724_010 0.1413998046 - - glutamate receptor family protein [Populus trichocarpa]
14 Hb_006198_160 0.1414184318 - - hypothetical protein POPTR_0002s24290g [Populus trichocarpa]
15 Hb_093541_010 0.1414189626 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000087_110 0.1414754384 - - conserved hypothetical protein [Ricinus communis]
17 Hb_015447_010 0.1414834837 - - PREDICTED: uncharacterized protein LOC105111046 [Populus euphratica]
18 Hb_003849_210 0.1418516706 transcription factor TF Family: ERF hypothetical protein RCOM_0793640 [Ricinus communis]
19 Hb_005081_050 0.1418787768 transcription factor TF Family: MYB-related PREDICTED: transcription factor WER-like [Prunus mume]
20 Hb_073680_010 0.142043625 - - Coiled-coil domain-containing protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_006012_030 Hb_006012_030 Hb_012799_010 Hb_012799_010 Hb_006012_030--Hb_012799_010 Hb_000099_110 Hb_000099_110 Hb_006012_030--Hb_000099_110 Hb_012545_020 Hb_012545_020 Hb_006012_030--Hb_012545_020 Hb_001396_270 Hb_001396_270 Hb_006012_030--Hb_001396_270 Hb_001428_010 Hb_001428_010 Hb_006012_030--Hb_001428_010 Hb_000277_040 Hb_000277_040 Hb_006012_030--Hb_000277_040 Hb_010812_080 Hb_010812_080 Hb_012799_010--Hb_010812_080 Hb_012799_010--Hb_012545_020 Hb_007227_020 Hb_007227_020 Hb_012799_010--Hb_007227_020 Hb_000679_180 Hb_000679_180 Hb_012799_010--Hb_000679_180 Hb_006663_120 Hb_006663_120 Hb_012799_010--Hb_006663_120 Hb_001002_010 Hb_001002_010 Hb_012799_010--Hb_001002_010 Hb_000099_110--Hb_012545_020 Hb_000099_110--Hb_000277_040 Hb_000099_110--Hb_010812_080 Hb_000087_110 Hb_000087_110 Hb_000099_110--Hb_000087_110 Hb_093541_010 Hb_093541_010 Hb_000099_110--Hb_093541_010 Hb_101724_010 Hb_101724_010 Hb_000099_110--Hb_101724_010 Hb_012545_020--Hb_000277_040 Hb_012545_020--Hb_010812_080 Hb_006198_160 Hb_006198_160 Hb_012545_020--Hb_006198_160 Hb_015447_010 Hb_015447_010 Hb_012545_020--Hb_015447_010 Hb_012545_020--Hb_101724_010 Hb_005914_220 Hb_005914_220 Hb_001396_270--Hb_005914_220 Hb_003988_020 Hb_003988_020 Hb_001396_270--Hb_003988_020 Hb_000042_120 Hb_000042_120 Hb_001396_270--Hb_000042_120 Hb_002374_540 Hb_002374_540 Hb_001396_270--Hb_002374_540 Hb_000270_590 Hb_000270_590 Hb_001396_270--Hb_000270_590 Hb_000156_150 Hb_000156_150 Hb_001428_010--Hb_000156_150 Hb_104362_010 Hb_104362_010 Hb_001428_010--Hb_104362_010 Hb_001428_010--Hb_000099_110 Hb_011609_200 Hb_011609_200 Hb_001428_010--Hb_011609_200 Hb_001428_010--Hb_000270_590 Hb_002186_120 Hb_002186_120 Hb_000277_040--Hb_002186_120 Hb_018671_010 Hb_018671_010 Hb_000277_040--Hb_018671_010 Hb_000053_150 Hb_000053_150 Hb_000277_040--Hb_000053_150 Hb_000277_040--Hb_010812_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0181527 0.0120779 0.138351 1.16424 0 0.0128148
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0103924 0

CAGE analysis