Hb_005914_220

Information

Type transcription factor
Description TF Family: Orphans
Location Contig5914: 141946-143895
Sequence    

Annotation

kegg
ID rcu:RCOM_1217770
description hypothetical protein
nr
ID XP_002528360.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q940T9
description Zinc finger protein CONSTANS-LIKE 4 OS=Arabidopsis thaliana GN=COL4 PE=2 SV=2
trembl
ID B9SQU1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1217770 PE=4 SV=1
Gene Ontology
ID GO:0016787
description cct motif family protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50263: 143021-143142
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005914_220 0.0 transcription factor TF Family: Orphans conserved hypothetical protein [Ricinus communis]
2 Hb_001396_270 0.145017699 - - 4-coumarate--CoA ligase family protein [Populus trichocarpa]
3 Hb_000042_120 0.1770275132 - - PREDICTED: uncharacterized protein LOC105632800 [Jatropha curcas]
4 Hb_000156_150 0.1808883945 - - hypothetical protein JCGZ_04603 [Jatropha curcas]
5 Hb_006012_030 0.1868650705 - - hypothetical protein POPTR_0008s02380g [Populus trichocarpa]
6 Hb_000389_130 0.1891345439 - - Dehydration-responsive protein RD22 precursor, putative [Ricinus communis]
7 Hb_001428_010 0.1895486778 - - PREDICTED: transcription factor PRE1-like [Jatropha curcas]
8 Hb_104362_010 0.1924962887 - - hypothetical protein POPTR_0247s002302g, partial [Populus trichocarpa]
9 Hb_000270_590 0.1934588017 - - hypothetical protein POPTR_0012s07820g [Populus trichocarpa]
10 Hb_017524_020 0.198798239 - - Rho GDP-dissociation inhibitor, putative [Ricinus communis]
11 Hb_017862_040 0.2027364972 - - PREDICTED: pleiotropic drug resistance protein 3-like [Prunus mume]
12 Hb_000164_200 0.2042973792 - - PREDICTED: premnaspirodiene oxygenase-like [Jatropha curcas]
13 Hb_005723_060 0.2050340975 - - -
14 Hb_050786_010 0.206076182 - - hypothetical protein MIMGU_mgv1a014824mg [Erythranthe guttata]
15 Hb_000296_030 0.2061096533 - - PREDICTED: uncharacterized protein LOC105636578 [Jatropha curcas]
16 Hb_000325_090 0.2061786511 transcription factor TF Family: bHLH PREDICTED: transcription factor PRE5-like [Gossypium raimondii]
17 Hb_069237_010 0.2105142873 - - -
18 Hb_000258_010 0.2105294042 - - lipid transfer precursor protein [Hevea brasiliensis]
19 Hb_005976_030 0.2107350192 - - PREDICTED: uncharacterized protein LOC105639715 [Jatropha curcas]
20 Hb_003729_040 0.2107488163 - - o-methyltransferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_005914_220 Hb_005914_220 Hb_001396_270 Hb_001396_270 Hb_005914_220--Hb_001396_270 Hb_000042_120 Hb_000042_120 Hb_005914_220--Hb_000042_120 Hb_000156_150 Hb_000156_150 Hb_005914_220--Hb_000156_150 Hb_006012_030 Hb_006012_030 Hb_005914_220--Hb_006012_030 Hb_000389_130 Hb_000389_130 Hb_005914_220--Hb_000389_130 Hb_001428_010 Hb_001428_010 Hb_005914_220--Hb_001428_010 Hb_001396_270--Hb_006012_030 Hb_003988_020 Hb_003988_020 Hb_001396_270--Hb_003988_020 Hb_001396_270--Hb_000042_120 Hb_002374_540 Hb_002374_540 Hb_001396_270--Hb_002374_540 Hb_000270_590 Hb_000270_590 Hb_001396_270--Hb_000270_590 Hb_001347_020 Hb_001347_020 Hb_000042_120--Hb_001347_020 Hb_000422_100 Hb_000422_100 Hb_000042_120--Hb_000422_100 Hb_111442_010 Hb_111442_010 Hb_000042_120--Hb_111442_010 Hb_130357_010 Hb_130357_010 Hb_000042_120--Hb_130357_010 Hb_003729_040 Hb_003729_040 Hb_000042_120--Hb_003729_040 Hb_000628_090 Hb_000628_090 Hb_000042_120--Hb_000628_090 Hb_000156_150--Hb_001428_010 Hb_011609_200 Hb_011609_200 Hb_000156_150--Hb_011609_200 Hb_104362_010 Hb_104362_010 Hb_000156_150--Hb_104362_010 Hb_000156_150--Hb_006012_030 Hb_002235_330 Hb_002235_330 Hb_000156_150--Hb_002235_330 Hb_000156_150--Hb_000270_590 Hb_012799_010 Hb_012799_010 Hb_006012_030--Hb_012799_010 Hb_000099_110 Hb_000099_110 Hb_006012_030--Hb_000099_110 Hb_012545_020 Hb_012545_020 Hb_006012_030--Hb_012545_020 Hb_006012_030--Hb_001428_010 Hb_000277_040 Hb_000277_040 Hb_006012_030--Hb_000277_040 Hb_001892_040 Hb_001892_040 Hb_000389_130--Hb_001892_040 Hb_001591_020 Hb_001591_020 Hb_000389_130--Hb_001591_020 Hb_000733_170 Hb_000733_170 Hb_000389_130--Hb_000733_170 Hb_000530_080 Hb_000530_080 Hb_000389_130--Hb_000530_080 Hb_005976_030 Hb_005976_030 Hb_000389_130--Hb_005976_030 Hb_004032_170 Hb_004032_170 Hb_000389_130--Hb_004032_170 Hb_001428_010--Hb_104362_010 Hb_001428_010--Hb_000099_110 Hb_001428_010--Hb_011609_200 Hb_001428_010--Hb_000270_590
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0950352 0 0.119816 3.17572 0.0497652 0.152017
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0124441 0

CAGE analysis