Hb_000389_130

Information

Type -
Description -
Location Contig389: 350425-351397
Sequence    

Annotation

kegg
ID rcu:RCOM_1674880
description Dehydration-responsive protein RD22 precursor, putative
nr
ID XP_002509472.1
description Dehydration-responsive protein RD22 precursor, putative [Ricinus communis]
swissprot
ID B9G9L9
description BURP domain-containing protein 17 OS=Oryza sativa subsp. japonica GN=BURP17 PE=2 SV=1
trembl
ID B9RBD8
description Dehydration-responsive protein RD22, putative OS=Ricinus communis GN=RCOM_1674880 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38967: 350282-351356
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000389_130 0.0 - - Dehydration-responsive protein RD22 precursor, putative [Ricinus communis]
2 Hb_001892_040 0.0500140238 transcription factor TF Family: HB Protein WUSCHEL, putative [Ricinus communis]
3 Hb_001591_020 0.050133361 transcription factor TF Family: bHLH basic helix-loop-helix family protein [Populus trichocarpa]
4 Hb_000733_170 0.0509118924 transcription factor TF Family: HB bel1 homeotic protein, putative [Ricinus communis]
5 Hb_000530_080 0.0516515594 - - PREDICTED: serine/threonine-protein kinase D6PKL2-like [Jatropha curcas]
6 Hb_005976_030 0.0519939068 - - PREDICTED: uncharacterized protein LOC105639715 [Jatropha curcas]
7 Hb_004032_170 0.0521411074 - - PREDICTED: indole-3-acetic acid-induced protein ARG7 [Jatropha curcas]
8 Hb_007432_040 0.0523607876 transcription factor TF Family: bHLH PREDICTED: transcription factor BEE 3-like [Jatropha curcas]
9 Hb_000258_010 0.0535985295 - - lipid transfer precursor protein [Hevea brasiliensis]
10 Hb_153199_010 0.05665805 - - -
11 Hb_069237_010 0.0591396436 - - -
12 Hb_003729_040 0.0624463536 - - o-methyltransferase, putative [Ricinus communis]
13 Hb_002235_340 0.0637833527 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]
14 Hb_130357_010 0.0650421073 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
15 Hb_001817_050 0.0656590455 transcription factor TF Family: C2H2 PREDICTED: transcriptional regulator SUPERMAN [Jatropha curcas]
16 Hb_000325_090 0.0700425927 transcription factor TF Family: bHLH PREDICTED: transcription factor PRE5-like [Gossypium raimondii]
17 Hb_001347_020 0.0722026073 - - PREDICTED: cytochrome P450 86B1-like [Populus euphratica]
18 Hb_000422_100 0.0731142004 - - PREDICTED: TMV resistance protein N-like [Populus euphratica]
19 Hb_000203_130 0.0742398789 - - -
20 Hb_111442_010 0.0751840415 desease resistance Gene Name: AAA_16 LRR and NB-ARC domains-containing disease resistance protein, putative [Theobroma cacao]

Gene co-expression network

sample Hb_000389_130 Hb_000389_130 Hb_001892_040 Hb_001892_040 Hb_000389_130--Hb_001892_040 Hb_001591_020 Hb_001591_020 Hb_000389_130--Hb_001591_020 Hb_000733_170 Hb_000733_170 Hb_000389_130--Hb_000733_170 Hb_000530_080 Hb_000530_080 Hb_000389_130--Hb_000530_080 Hb_005976_030 Hb_005976_030 Hb_000389_130--Hb_005976_030 Hb_004032_170 Hb_004032_170 Hb_000389_130--Hb_004032_170 Hb_001892_040--Hb_001591_020 Hb_001892_040--Hb_000733_170 Hb_001892_040--Hb_005976_030 Hb_001892_040--Hb_000530_080 Hb_001892_040--Hb_004032_170 Hb_007432_040 Hb_007432_040 Hb_001892_040--Hb_007432_040 Hb_001591_020--Hb_000733_170 Hb_001591_020--Hb_000530_080 Hb_001591_020--Hb_004032_170 Hb_001591_020--Hb_007432_040 Hb_001591_020--Hb_005976_030 Hb_000733_170--Hb_000530_080 Hb_000733_170--Hb_004032_170 Hb_000733_170--Hb_007432_040 Hb_153199_010 Hb_153199_010 Hb_000733_170--Hb_153199_010 Hb_000530_080--Hb_004032_170 Hb_000530_080--Hb_007432_040 Hb_000530_080--Hb_153199_010 Hb_000258_010 Hb_000258_010 Hb_005976_030--Hb_000258_010 Hb_069237_010 Hb_069237_010 Hb_005976_030--Hb_069237_010 Hb_003729_040 Hb_003729_040 Hb_005976_030--Hb_003729_040 Hb_005976_030--Hb_000733_170 Hb_004032_170--Hb_007432_040 Hb_004032_170--Hb_153199_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.115211 4.34181 0 0.022351
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis