Hb_001741_110

Information

Type rubber biosynthesis
Description Gene Name: REF7
Location Contig1741: 144017-145651
Sequence    

Annotation

kegg
ID gmx:100500275
description uncharacterized LOC100500275
nr
ID KHN24224.1
description REF/SRPP-like protein [Glycine soja]
swissprot
ID -
description -
trembl
ID A0A0B2QW00
description REF/SRPP-like protein OS=Glycine soja GN=glysoja_037058 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16606: 144013-145665
cDNA
(Sanger)
(ID:Location)		 033_O08.ab1: 144015-145458

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001741_110 0.0 rubber biosynthesis Gene Name: REF7 REF/SRPP-like protein [Glycine soja]
2 Hb_002374_540 0.1128567039 - - RecName: Full=Esterase; AltName: Full=Early nodule-specific protein homolog; AltName: Full=Latex allergen Hev b 13; AltName: Allergen=Hev b 13; Flags: Precursor [Hevea brasiliensis]
3 Hb_000087_010 0.1193581056 - - mta/sah nucleosidase, putative [Ricinus communis]
4 Hb_146255_010 0.159923194 - - PREDICTED: uncharacterized protein LOC105643649 [Jatropha curcas]
5 Hb_011169_010 0.1804542427 - - mta/sah nucleosidase, putative [Ricinus communis]
6 Hb_004884_050 0.1842998694 - - PREDICTED: uncharacterized protein LOC105648112 [Jatropha curcas]
7 Hb_000313_080 0.1849511578 rubber biosynthesis Gene Name: CPT3 cis-prenyltransferase 3 [Hevea brasiliensis]
8 Hb_011900_040 0.1852331498 - - PREDICTED: microtubule-associated protein 70-5 [Jatropha curcas]
9 Hb_001396_270 0.1860192259 - - 4-coumarate--CoA ligase family protein [Populus trichocarpa]
10 Hb_000500_070 0.1895563978 - - hypothetical protein POPTR_0015s12340g [Populus trichocarpa]
11 Hb_005357_170 0.1990649809 - - Pectinesterase precursor, putative [Ricinus communis]
12 Hb_017524_020 0.1995977051 - - Rho GDP-dissociation inhibitor, putative [Ricinus communis]
13 Hb_005539_330 0.2030560898 - - PREDICTED: WAT1-related protein At2g39510-like [Jatropha curcas]
14 Hb_003765_010 0.2050844876 - - berberine bridge enzyme [Hevea brasiliensis]
15 Hb_001887_010 0.2075893968 - - mta/sah nucleosidase, putative [Ricinus communis]
16 Hb_000042_120 0.2076781401 - - PREDICTED: uncharacterized protein LOC105632800 [Jatropha curcas]
17 Hb_006889_010 0.2077431478 - - PREDICTED: agmatine coumaroyltransferase-2-like [Jatropha curcas]
18 Hb_005015_090 0.2077641443 - - PREDICTED: cytochrome P450 78A7 [Jatropha curcas]
19 Hb_001246_080 0.2080426596 - - PREDICTED: putative invertase inhibitor [Jatropha curcas]
20 Hb_001269_100 0.2088292459 - - plasma membrane ATPase 1, partial [Triticum aestivum]

Gene co-expression network

sample Hb_001741_110 Hb_001741_110 Hb_002374_540 Hb_002374_540 Hb_001741_110--Hb_002374_540 Hb_000087_010 Hb_000087_010 Hb_001741_110--Hb_000087_010 Hb_146255_010 Hb_146255_010 Hb_001741_110--Hb_146255_010 Hb_011169_010 Hb_011169_010 Hb_001741_110--Hb_011169_010 Hb_004884_050 Hb_004884_050 Hb_001741_110--Hb_004884_050 Hb_000313_080 Hb_000313_080 Hb_001741_110--Hb_000313_080 Hb_002374_540--Hb_146255_010 Hb_002374_540--Hb_000313_080 Hb_002374_540--Hb_000087_010 Hb_001396_270 Hb_001396_270 Hb_002374_540--Hb_001396_270 Hb_005357_170 Hb_005357_170 Hb_002374_540--Hb_005357_170 Hb_000087_010--Hb_004884_050 Hb_000087_010--Hb_011169_010 Hb_000115_210 Hb_000115_210 Hb_000087_010--Hb_000115_210 Hb_006889_010 Hb_006889_010 Hb_000087_010--Hb_006889_010 Hb_146255_010--Hb_000313_080 Hb_001887_010 Hb_001887_010 Hb_146255_010--Hb_001887_010 Hb_000392_060 Hb_000392_060 Hb_146255_010--Hb_000392_060 Hb_003685_070 Hb_003685_070 Hb_146255_010--Hb_003685_070 Hb_006061_030 Hb_006061_030 Hb_146255_010--Hb_006061_030 Hb_003765_010 Hb_003765_010 Hb_011169_010--Hb_003765_010 Hb_000107_240 Hb_000107_240 Hb_011169_010--Hb_000107_240 Hb_003020_200 Hb_003020_200 Hb_011169_010--Hb_003020_200 Hb_000868_020 Hb_000868_020 Hb_011169_010--Hb_000868_020 Hb_103468_010 Hb_103468_010 Hb_011169_010--Hb_103468_010 Hb_001123_080 Hb_001123_080 Hb_004884_050--Hb_001123_080 Hb_006970_180 Hb_006970_180 Hb_004884_050--Hb_006970_180 Hb_006618_060 Hb_006618_060 Hb_004884_050--Hb_006618_060 Hb_004884_050--Hb_006889_010 Hb_151436_010 Hb_151436_010 Hb_004884_050--Hb_151436_010 Hb_085158_010 Hb_085158_010 Hb_004884_050--Hb_085158_010 Hb_000313_080--Hb_003685_070 Hb_000313_080--Hb_005357_170 Hb_000313_080--Hb_001887_010 Hb_000313_080--Hb_006061_030 Hb_015978_020 Hb_015978_020 Hb_000313_080--Hb_015978_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
129.691 9.20571 98.9928 1991.67 21.4882 9.81299
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.62636 2.5809 28.2262 3.20514 84.0938

CAGE analysis