Hb_000115_210

Information

Type transcription factor
Description TF Family: bHLH
Location Contig115: 213701-215136
Sequence    

Annotation

kegg
ID cit:102626850
description transcription factor bHLH75-like
nr
ID XP_012082161.1
description PREDICTED: transcription factor BEE 3-like [Jatropha curcas]
swissprot
ID Q8GWK7
description Transcription factor BEE 3 OS=Arabidopsis thaliana GN=BEE3 PE=2 SV=1
trembl
ID A0A067JZM3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18352 PE=4 SV=1
Gene Ontology
ID GO:0005634
description transcription factor bhlh75-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000115_210 0.0 transcription factor TF Family: bHLH PREDICTED: transcription factor BEE 3-like [Jatropha curcas]
2 Hb_004162_150 0.0771063106 - - hypothetical protein POPTR_0009s00870g [Populus trichocarpa]
3 Hb_000307_160 0.0827402074 - - PREDICTED: uncharacterized protein At1g76070 [Jatropha curcas]
4 Hb_005015_090 0.0933619186 - - PREDICTED: cytochrome P450 78A7 [Jatropha curcas]
5 Hb_015183_090 0.0962835762 - - PREDICTED: 3-ketoacyl-CoA synthase 21-like [Jatropha curcas]
6 Hb_000331_380 0.1001531977 - - hypothetical protein POPTR_0012s09560g [Populus trichocarpa]
7 Hb_000431_050 0.1005885745 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000485_050 0.1037627779 - - PREDICTED: alpha-dioxygenase 1 [Jatropha curcas]
9 Hb_002073_210 0.106696753 - - conserved hypothetical protein [Ricinus communis]
10 Hb_003925_010 0.1084404505 - - Polygalacturonase precursor, putative [Ricinus communis]
11 Hb_085158_010 0.1096100377 transcription factor TF Family: C2H2 TRANSPARENT TESTA 1 protein, putative [Ricinus communis]
12 Hb_000352_210 0.1097637918 - - PREDICTED: xyloglucan endotransglucosylase/hydrolase 1 [Jatropha curcas]
13 Hb_000107_240 0.1101895583 - - organic anion transporter, putative [Ricinus communis]
14 Hb_001634_050 0.1113920631 - - PREDICTED: fasciclin-like arabinogalactan protein 12 [Jatropha curcas]
15 Hb_151436_010 0.1164834567 - - PREDICTED: uncharacterized protein LOC105137019 [Populus euphratica]
16 Hb_000429_070 0.1186631468 - - hypothetical protein POPTR_0006s05480g [Populus trichocarpa]
17 Hb_005539_330 0.1194922297 - - PREDICTED: WAT1-related protein At2g39510-like [Jatropha curcas]
18 Hb_006249_010 0.1211234245 - - hypothetical protein JCGZ_13152 [Jatropha curcas]
19 Hb_000868_020 0.1231208858 - - -
20 Hb_006970_180 0.1240965176 - - PREDICTED: DNA-damage-repair/toleration protein DRT100-like [Jatropha curcas]

Gene co-expression network

sample Hb_000115_210 Hb_000115_210 Hb_004162_150 Hb_004162_150 Hb_000115_210--Hb_004162_150 Hb_000307_160 Hb_000307_160 Hb_000115_210--Hb_000307_160 Hb_005015_090 Hb_005015_090 Hb_000115_210--Hb_005015_090 Hb_015183_090 Hb_015183_090 Hb_000115_210--Hb_015183_090 Hb_000331_380 Hb_000331_380 Hb_000115_210--Hb_000331_380 Hb_000431_050 Hb_000431_050 Hb_000115_210--Hb_000431_050 Hb_004162_150--Hb_000307_160 Hb_000485_050 Hb_000485_050 Hb_004162_150--Hb_000485_050 Hb_003925_010 Hb_003925_010 Hb_004162_150--Hb_003925_010 Hb_004162_150--Hb_015183_090 Hb_004162_150--Hb_000431_050 Hb_000307_160--Hb_000485_050 Hb_000107_240 Hb_000107_240 Hb_000307_160--Hb_000107_240 Hb_000868_020 Hb_000868_020 Hb_000307_160--Hb_000868_020 Hb_000307_160--Hb_003925_010 Hb_006249_010 Hb_006249_010 Hb_000307_160--Hb_006249_010 Hb_000431_040 Hb_000431_040 Hb_005015_090--Hb_000431_040 Hb_005015_090--Hb_000431_050 Hb_002757_020 Hb_002757_020 Hb_005015_090--Hb_002757_020 Hb_000352_210 Hb_000352_210 Hb_005015_090--Hb_000352_210 Hb_005015_090--Hb_000331_380 Hb_015183_090--Hb_000352_210 Hb_015183_090--Hb_000331_380 Hb_015183_090--Hb_000431_050 Hb_015183_090--Hb_000307_160 Hb_003152_010 Hb_003152_010 Hb_015183_090--Hb_003152_010 Hb_000331_380--Hb_000352_210 Hb_000331_380--Hb_000431_050 Hb_002073_210 Hb_002073_210 Hb_000331_380--Hb_002073_210 Hb_004396_020 Hb_004396_020 Hb_000331_380--Hb_004396_020 Hb_000392_080 Hb_000392_080 Hb_000331_380--Hb_000392_080 Hb_007007_140 Hb_007007_140 Hb_000331_380--Hb_007007_140 Hb_085158_010 Hb_085158_010 Hb_000431_050--Hb_085158_010 Hb_151436_010 Hb_151436_010 Hb_000431_050--Hb_151436_010 Hb_006970_180 Hb_006970_180 Hb_000431_050--Hb_006970_180 Hb_000431_050--Hb_002073_210 Hb_000431_050--Hb_000352_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.260999 6.24496 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0778108 0 0 0 0.364197

CAGE analysis