Hb_015183_090

Information

Type -
Description -
Location Contig15183: 50901-54687
Sequence    

Annotation

kegg
ID rcu:RCOM_0625860
description acyltransferase, putative
nr
ID XP_012073194.1
description PREDICTED: 3-ketoacyl-CoA synthase 21-like [Jatropha curcas]
swissprot
ID Q9LZ72
description 3-ketoacyl-CoA synthase 21 OS=Arabidopsis thaliana GN=KCS21 PE=2 SV=1
trembl
ID A0A067LMQ4
description 3-ketoacyl-CoA synthase OS=Jatropha curcas GN=JCGZ_06616 PE=3 SV=1
Gene Ontology
ID GO:0016020
description 3-ketoacyl- synthase 21-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12923: 53881-54180
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_015183_090 0.0 - - PREDICTED: 3-ketoacyl-CoA synthase 21-like [Jatropha curcas]
2 Hb_004162_150 0.0666591774 - - hypothetical protein POPTR_0009s00870g [Populus trichocarpa]
3 Hb_000352_210 0.0735544881 - - PREDICTED: xyloglucan endotransglucosylase/hydrolase 1 [Jatropha curcas]
4 Hb_000331_380 0.0748418408 - - hypothetical protein POPTR_0012s09560g [Populus trichocarpa]
5 Hb_000431_050 0.0768687401 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000307_160 0.0790033355 - - PREDICTED: uncharacterized protein At1g76070 [Jatropha curcas]
7 Hb_003152_010 0.0793428898 - - -
8 Hb_006889_010 0.0893674035 - - PREDICTED: agmatine coumaroyltransferase-2-like [Jatropha curcas]
9 Hb_085158_010 0.0894125446 transcription factor TF Family: C2H2 TRANSPARENT TESTA 1 protein, putative [Ricinus communis]
10 Hb_002073_210 0.0909435897 - - conserved hypothetical protein [Ricinus communis]
11 Hb_005539_330 0.0922659069 - - PREDICTED: WAT1-related protein At2g39510-like [Jatropha curcas]
12 Hb_002681_150 0.0924977369 - - uridine cytidine kinase I, putative [Ricinus communis]
13 Hb_006970_180 0.0962025316 - - PREDICTED: DNA-damage-repair/toleration protein DRT100-like [Jatropha curcas]
14 Hb_000115_210 0.0962835762 transcription factor TF Family: bHLH PREDICTED: transcription factor BEE 3-like [Jatropha curcas]
15 Hb_151436_010 0.0986253835 - - PREDICTED: uncharacterized protein LOC105137019 [Populus euphratica]
16 Hb_000107_240 0.1006253054 - - organic anion transporter, putative [Ricinus communis]
17 Hb_001634_050 0.1016290314 - - PREDICTED: fasciclin-like arabinogalactan protein 12 [Jatropha curcas]
18 Hb_003925_010 0.1031612686 - - Polygalacturonase precursor, putative [Ricinus communis]
19 Hb_000431_040 0.1052310019 - - PREDICTED: uncharacterized protein LOC105635551 [Jatropha curcas]
20 Hb_000392_080 0.1082025636 - - hypothetical protein glysoja_034865 [Glycine soja]

Gene co-expression network

sample Hb_015183_090 Hb_015183_090 Hb_004162_150 Hb_004162_150 Hb_015183_090--Hb_004162_150 Hb_000352_210 Hb_000352_210 Hb_015183_090--Hb_000352_210 Hb_000331_380 Hb_000331_380 Hb_015183_090--Hb_000331_380 Hb_000431_050 Hb_000431_050 Hb_015183_090--Hb_000431_050 Hb_000307_160 Hb_000307_160 Hb_015183_090--Hb_000307_160 Hb_003152_010 Hb_003152_010 Hb_015183_090--Hb_003152_010 Hb_004162_150--Hb_000307_160 Hb_000485_050 Hb_000485_050 Hb_004162_150--Hb_000485_050 Hb_003925_010 Hb_003925_010 Hb_004162_150--Hb_003925_010 Hb_004162_150--Hb_000431_050 Hb_000115_210 Hb_000115_210 Hb_004162_150--Hb_000115_210 Hb_000352_210--Hb_000331_380 Hb_000392_080 Hb_000392_080 Hb_000352_210--Hb_000392_080 Hb_000352_210--Hb_000431_050 Hb_004396_020 Hb_004396_020 Hb_000352_210--Hb_004396_020 Hb_002073_210 Hb_002073_210 Hb_000352_210--Hb_002073_210 Hb_000352_210--Hb_003152_010 Hb_000331_380--Hb_000431_050 Hb_000331_380--Hb_002073_210 Hb_000331_380--Hb_004396_020 Hb_000331_380--Hb_000392_080 Hb_007007_140 Hb_007007_140 Hb_000331_380--Hb_007007_140 Hb_085158_010 Hb_085158_010 Hb_000431_050--Hb_085158_010 Hb_151436_010 Hb_151436_010 Hb_000431_050--Hb_151436_010 Hb_006970_180 Hb_006970_180 Hb_000431_050--Hb_006970_180 Hb_000431_050--Hb_002073_210 Hb_000307_160--Hb_000485_050 Hb_000107_240 Hb_000107_240 Hb_000307_160--Hb_000107_240 Hb_000868_020 Hb_000868_020 Hb_000307_160--Hb_000868_020 Hb_000307_160--Hb_003925_010 Hb_006249_010 Hb_006249_010 Hb_000307_160--Hb_006249_010 Hb_006889_010 Hb_006889_010 Hb_003152_010--Hb_006889_010 Hb_003152_010--Hb_006970_180 Hb_003152_010--Hb_002073_210 Hb_003152_010--Hb_151436_010 Hb_003152_010--Hb_000431_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.294709 5.74392 0 0.0127623
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0275592 0.289759

CAGE analysis