Hb_001758_090

Information

Type -
Description -
Location Contig1758: 95587-95871
Sequence    

Annotation

kegg
ID pop:POPTR_0006s09110g
description POPTRDRAFT_560811; hypothetical protein
nr
ID XP_002308177.1
description hypothetical protein POPTR_0006s09110g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9HC38
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s09110g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001758_090 0.0 - - hypothetical protein POPTR_0006s09110g [Populus trichocarpa]
2 Hb_004657_070 0.1491647855 - - PREDICTED: protein IRX15-LIKE [Jatropha curcas]
3 Hb_000617_300 0.1527298834 - - RALFL33, putative [Ricinus communis]
4 Hb_000428_040 0.1570289124 - - PREDICTED: protein trichome birefringence-like 31 [Populus euphratica]
5 Hb_003055_100 0.1654477718 - - PREDICTED: uncharacterized protein At5g65660 [Jatropha curcas]
6 Hb_007574_040 0.1715737745 - - PREDICTED: uncharacterized protein LOC105638144 [Jatropha curcas]
7 Hb_000622_190 0.1763443426 - - PREDICTED: uncharacterized protein LOC105642890 [Jatropha curcas]
8 Hb_003020_200 0.1780733633 - - PREDICTED: uncharacterized protein LOC105131117 [Populus euphratica]
9 Hb_000236_230 0.1815082118 - - PREDICTED: E3 ubiquitin-protein ligase At4g11680 isoform X2 [Jatropha curcas]
10 Hb_010457_040 0.1825094579 - - PREDICTED: uncharacterized protein LOC101491058 [Cicer arietinum]
11 Hb_000115_200 0.1835534805 - - PREDICTED: endonuclease 2 [Jatropha curcas]
12 Hb_005914_130 0.1838383114 - - -
13 Hb_008695_220 0.1852231798 - - PREDICTED: uncharacterized protein LOC105638863 [Jatropha curcas]
14 Hb_000054_010 0.1887554149 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
15 Hb_007311_050 0.190918759 - - conserved hypothetical protein [Ricinus communis]
16 Hb_004586_410 0.1913686435 - - ring finger protein, putative [Ricinus communis]
17 Hb_000622_120 0.1939424277 - - hypothetical protein [Hevea brasiliensis]
18 Hb_000482_080 0.1952711293 - - PREDICTED: uncharacterized protein LOC105638144 [Jatropha curcas]
19 Hb_017914_020 0.1969935304 - - -
20 Hb_025557_070 0.197756416 transcription factor TF Family: zf-HD hypothetical protein JCGZ_11626 [Jatropha curcas]

Gene co-expression network

sample Hb_001758_090 Hb_001758_090 Hb_004657_070 Hb_004657_070 Hb_001758_090--Hb_004657_070 Hb_000617_300 Hb_000617_300 Hb_001758_090--Hb_000617_300 Hb_000428_040 Hb_000428_040 Hb_001758_090--Hb_000428_040 Hb_003055_100 Hb_003055_100 Hb_001758_090--Hb_003055_100 Hb_007574_040 Hb_007574_040 Hb_001758_090--Hb_007574_040 Hb_000622_190 Hb_000622_190 Hb_001758_090--Hb_000622_190 Hb_004657_070--Hb_000428_040 Hb_000482_080 Hb_000482_080 Hb_004657_070--Hb_000482_080 Hb_000193_130 Hb_000193_130 Hb_004657_070--Hb_000193_130 Hb_000608_090 Hb_000608_090 Hb_004657_070--Hb_000608_090 Hb_031330_010 Hb_031330_010 Hb_004657_070--Hb_031330_010 Hb_004586_440 Hb_004586_440 Hb_004657_070--Hb_004586_440 Hb_003020_200 Hb_003020_200 Hb_000617_300--Hb_003020_200 Hb_003411_120 Hb_003411_120 Hb_000617_300--Hb_003411_120 Hb_003371_030 Hb_003371_030 Hb_000617_300--Hb_003371_030 Hb_019053_050 Hb_019053_050 Hb_000617_300--Hb_019053_050 Hb_000995_020 Hb_000995_020 Hb_000617_300--Hb_000995_020 Hb_116701_010 Hb_116701_010 Hb_000428_040--Hb_116701_010 Hb_000236_230 Hb_000236_230 Hb_000428_040--Hb_000236_230 Hb_000130_350 Hb_000130_350 Hb_000428_040--Hb_000130_350 Hb_008762_010 Hb_008762_010 Hb_000428_040--Hb_008762_010 Hb_000173_140 Hb_000173_140 Hb_000428_040--Hb_000173_140 Hb_001584_270 Hb_001584_270 Hb_003055_100--Hb_001584_270 Hb_000115_200 Hb_000115_200 Hb_003055_100--Hb_000115_200 Hb_000917_030 Hb_000917_030 Hb_003055_100--Hb_000917_030 Hb_006386_010 Hb_006386_010 Hb_003055_100--Hb_006386_010 Hb_001195_710 Hb_001195_710 Hb_003055_100--Hb_001195_710 Hb_031579_010 Hb_031579_010 Hb_003055_100--Hb_031579_010 Hb_000297_140 Hb_000297_140 Hb_007574_040--Hb_000297_140 Hb_008695_220 Hb_008695_220 Hb_007574_040--Hb_008695_220 Hb_000054_010 Hb_000054_010 Hb_007574_040--Hb_000054_010 Hb_000622_120 Hb_000622_120 Hb_007574_040--Hb_000622_120 Hb_002759_030 Hb_002759_030 Hb_007574_040--Hb_002759_030 Hb_007574_040--Hb_000622_190 Hb_102772_010 Hb_102772_010 Hb_000622_190--Hb_102772_010 Hb_000622_190--Hb_000608_090 Hb_007311_050 Hb_007311_050 Hb_000622_190--Hb_007311_050 Hb_000622_190--Hb_004586_440 Hb_000622_190--Hb_000622_120 Hb_000362_030 Hb_000362_030 Hb_000622_190--Hb_000362_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.181292 5.22297 5.20353 219.593 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.13181 14.168 4.19736 9.58821 59.0627

CAGE analysis