Hb_001369_490

Information

Type -
Description -
Location Contig1369: 420694-423405
Sequence    

Annotation

kegg
ID rcu:RCOM_1500180
description Pectinesterase-2 precursor, putative (EC:3.1.1.11)
nr
ID XP_012090424.1
description PREDICTED: probable pectinesterase/pectinesterase inhibitor 33 [Jatropha curcas]
swissprot
ID Q9FHN5
description Probable pectinesterase/pectinesterase inhibitor 59 OS=Arabidopsis thaliana GN=PME59 PE=2 SV=1
trembl
ID A0A067JHY5
description Pectinesterase OS=Jatropha curcas GN=JCGZ_26244 PE=3 SV=1
Gene Ontology
ID GO:0005618
description probable pectinesterase pectinesterase inhibitor 33

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10195: 421260-422671
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001369_490 0.0 - - PREDICTED: probable pectinesterase/pectinesterase inhibitor 33 [Jatropha curcas]
2 Hb_188742_010 0.0883868957 - - hypothetical protein POPTR_0019s12290g [Populus trichocarpa]
3 Hb_026196_020 0.0907652379 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
4 Hb_000896_030 0.0925690931 - - conserved hypothetical protein [Ricinus communis]
5 Hb_124677_070 0.0943891653 - - PREDICTED: DNA-damage-repair/toleration protein DRT100-like [Jatropha curcas]
6 Hb_000742_040 0.1013133564 - - PREDICTED: caffeoylshikimate esterase-like [Jatropha curcas]
7 Hb_000802_040 0.1070876182 - - PREDICTED: probable inositol transporter 2 [Jatropha curcas]
8 Hb_010327_040 0.1113485408 - - hypothetical protein POPTR_0004s17300g [Populus trichocarpa]
9 Hb_010608_040 0.1143034349 - - PREDICTED: aluminum-activated malate transporter 9-like [Jatropha curcas]
10 Hb_002999_020 0.1161571366 - - PREDICTED: ribonuclease 3-like [Jatropha curcas]
11 Hb_004690_020 0.117297455 - - PREDICTED: MLP-like protein 328 [Jatropha curcas]
12 Hb_158909_010 0.1185550508 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
13 Hb_003251_020 0.1185623734 - - Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B [Gossypium arboreum]
14 Hb_000107_690 0.1185656549 - - zinc finger protein, putative [Ricinus communis]
15 Hb_037000_010 0.1185708462 - - PREDICTED: putative germin-like protein 2-1 [Jatropha curcas]
16 Hb_004957_040 0.1186175386 - - PREDICTED: uncharacterized protein LOC104890338 [Beta vulgaris subsp. vulgaris]
17 Hb_086639_110 0.1187045026 transcription factor TF Family: G2-like DNA binding protein, putative [Theobroma cacao]
18 Hb_000330_010 0.1187122993 - - hypothetical protein POPTR_0005s25020g [Populus trichocarpa]
19 Hb_000134_140 0.1187733683 - - lipid binding protein, putative [Ricinus communis]
20 Hb_000130_430 0.1190693631 - - PREDICTED: UDP-glycosyltransferase 79B6-like [Jatropha curcas]

Gene co-expression network

sample Hb_001369_490 Hb_001369_490 Hb_188742_010 Hb_188742_010 Hb_001369_490--Hb_188742_010 Hb_026196_020 Hb_026196_020 Hb_001369_490--Hb_026196_020 Hb_000896_030 Hb_000896_030 Hb_001369_490--Hb_000896_030 Hb_124677_070 Hb_124677_070 Hb_001369_490--Hb_124677_070 Hb_000742_040 Hb_000742_040 Hb_001369_490--Hb_000742_040 Hb_000802_040 Hb_000802_040 Hb_001369_490--Hb_000802_040 Hb_188742_010--Hb_026196_020 Hb_188742_010--Hb_124677_070 Hb_000141_050 Hb_000141_050 Hb_188742_010--Hb_000141_050 Hb_188742_010--Hb_000896_030 Hb_188742_010--Hb_000742_040 Hb_012675_010 Hb_012675_010 Hb_188742_010--Hb_012675_010 Hb_026196_020--Hb_124677_070 Hb_026196_020--Hb_000802_040 Hb_010327_040 Hb_010327_040 Hb_026196_020--Hb_010327_040 Hb_026196_020--Hb_000742_040 Hb_026196_020--Hb_000896_030 Hb_131748_010 Hb_131748_010 Hb_000896_030--Hb_131748_010 Hb_000134_140 Hb_000134_140 Hb_000896_030--Hb_000134_140 Hb_000340_170 Hb_000340_170 Hb_000896_030--Hb_000340_170 Hb_156212_010 Hb_156212_010 Hb_000896_030--Hb_156212_010 Hb_000002_020 Hb_000002_020 Hb_000896_030--Hb_000002_020 Hb_004957_040 Hb_004957_040 Hb_000896_030--Hb_004957_040 Hb_124677_070--Hb_000742_040 Hb_124677_070--Hb_000802_040 Hb_002999_020 Hb_002999_020 Hb_124677_070--Hb_002999_020 Hb_124677_070--Hb_010327_040 Hb_000742_040--Hb_002999_020 Hb_000796_110 Hb_000796_110 Hb_000742_040--Hb_000796_110 Hb_016734_110 Hb_016734_110 Hb_000742_040--Hb_016734_110 Hb_153258_030 Hb_153258_030 Hb_000742_040--Hb_153258_030 Hb_000742_040--Hb_000802_040 Hb_000802_040--Hb_010327_040 Hb_001416_120 Hb_001416_120 Hb_000802_040--Hb_001416_120 Hb_000802_040--Hb_002999_020 Hb_004693_040 Hb_004693_040 Hb_000802_040--Hb_004693_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0111399 0.0184071 1.57201 6.61851 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0253368 0 0.0376906 0.0158787 0.125979

CAGE analysis