Hb_008406_050

Information

Type transcription factor
Description TF Family: C3H
Location Contig8406: 51524-52711
Sequence    

Annotation

kegg
ID pop:POPTR_0017s04510g
description zinc finger family protein
nr
ID XP_012088238.1
description PREDICTED: zinc finger CCCH domain-containing protein 2 [Jatropha curcas]
swissprot
ID Q9ZWA1
description Zinc finger CCCH domain-containing protein 2 OS=Arabidopsis thaliana GN=At1g03790 PE=2 SV=1
trembl
ID A0A067JJM3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25754 PE=4 SV=1
Gene Ontology
ID GO:0046872
description zinc finger ccch domain-containing protein 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008406_050 0.0 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 2 [Jatropha curcas]
2 Hb_004474_020 0.1056635154 - - aldo-keto reductase, putative [Ricinus communis]
3 Hb_034310_020 0.1107966058 - - PREDICTED: proline-rich receptor-like protein kinase PERK3 [Jatropha curcas]
4 Hb_004899_380 0.1138333121 - - conserved hypothetical protein [Ricinus communis]
5 Hb_048987_020 0.1252759847 - - hypothetical protein JCGZ_27055 [Jatropha curcas]
6 Hb_033772_040 0.1322536767 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000224_020 0.1400956184 - - PREDICTED: uncharacterized protein LOC105640888 [Jatropha curcas]
8 Hb_003777_150 0.1430617071 - - PREDICTED: uncharacterized protein LOC105640938 isoform X1 [Jatropha curcas]
9 Hb_000628_060 0.1444283726 - - PREDICTED: calmodulin-like protein 5 [Solanum lycopersicum]
10 Hb_081228_010 0.1458503614 - - SENESCENCE-RELATED GENE 1 family protein [Populus trichocarpa]
11 Hb_004732_070 0.1489987 - - conserved hypothetical protein [Ricinus communis]
12 Hb_002925_040 0.1535867498 desease resistance Gene Name: TIR hypothetical protein JCGZ_01545 [Jatropha curcas]
13 Hb_003893_060 0.1560439251 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001248_180 0.1599229506 - - -
15 Hb_000224_050 0.1610948909 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000696_120 0.1613402089 - - PREDICTED: protein FD [Populus euphratica]
17 Hb_005057_020 0.1639774453 - - PREDICTED: uncharacterized protein LOC105631610 [Jatropha curcas]
18 Hb_010080_040 0.1642963586 - - conserved hypothetical protein [Ricinus communis]
19 Hb_003216_010 0.1643265112 - - glycosyl hydrolase family protein [Populus trichocarpa]
20 Hb_008196_010 0.1650832571 - - unnamed protein product [Coffea canephora]

Gene co-expression network

sample Hb_008406_050 Hb_008406_050 Hb_004474_020 Hb_004474_020 Hb_008406_050--Hb_004474_020 Hb_034310_020 Hb_034310_020 Hb_008406_050--Hb_034310_020 Hb_004899_380 Hb_004899_380 Hb_008406_050--Hb_004899_380 Hb_048987_020 Hb_048987_020 Hb_008406_050--Hb_048987_020 Hb_033772_040 Hb_033772_040 Hb_008406_050--Hb_033772_040 Hb_000224_020 Hb_000224_020 Hb_008406_050--Hb_000224_020 Hb_004474_020--Hb_004899_380 Hb_004474_020--Hb_000224_020 Hb_004474_020--Hb_034310_020 Hb_004474_020--Hb_048987_020 Hb_003777_150 Hb_003777_150 Hb_004474_020--Hb_003777_150 Hb_034310_020--Hb_033772_040 Hb_034310_020--Hb_004899_380 Hb_004319_100 Hb_004319_100 Hb_034310_020--Hb_004319_100 Hb_034310_020--Hb_048987_020 Hb_004899_380--Hb_048987_020 Hb_004899_380--Hb_000224_020 Hb_001006_080 Hb_001006_080 Hb_004899_380--Hb_001006_080 Hb_000696_120 Hb_000696_120 Hb_004899_380--Hb_000696_120 Hb_087314_010 Hb_087314_010 Hb_048987_020--Hb_087314_010 Hb_003878_130 Hb_003878_130 Hb_048987_020--Hb_003878_130 Hb_180695_010 Hb_180695_010 Hb_048987_020--Hb_180695_010 Hb_033772_040--Hb_004319_100 Hb_033772_040--Hb_004474_020 Hb_001529_010 Hb_001529_010 Hb_033772_040--Hb_001529_010 Hb_010926_020 Hb_010926_020 Hb_033772_040--Hb_010926_020 Hb_033772_040--Hb_004899_380 Hb_002894_020 Hb_002894_020 Hb_000224_020--Hb_002894_020 Hb_000224_050 Hb_000224_050 Hb_000224_020--Hb_000224_050 Hb_000917_220 Hb_000917_220 Hb_000224_020--Hb_000917_220 Hb_174829_030 Hb_174829_030 Hb_000224_020--Hb_174829_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.107854 1.0678 2.90351 12.2644 0.069728 0.0725084
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0322996 0.0600548 0.517652 0

CAGE analysis