Hb_000220_020

Information

Type -
Description -
Location Contig220: 49122-57324
Sequence    

Annotation

kegg
ID cic:CICLE_v10017575mg
description hypothetical protein
nr
ID XP_006448383.1
description hypothetical protein CICLE_v10017575mg [Citrus clementina]
swissprot
ID -
description -
trembl
ID W5CME7
description Uncharacterized protein OS=Triticum aestivum PE=4 SV=1
Gene Ontology
ID GO:0016021
description amino-acid permease bat1 homolog isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22635: 49257-78836
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000220_020 0.0 - - hypothetical protein CICLE_v10017575mg [Citrus clementina]
2 Hb_019299_020 0.1117903769 - - PREDICTED: putative kinase-like protein TMKL1 [Jatropha curcas]
3 Hb_000139_460 0.121960749 - - basic 7S globulin 2 precursor small subunit, putative [Ricinus communis]
4 Hb_002304_110 0.1280745101 - - hypothetical protein MIMGU_mgv1a023246mg [Erythranthe guttata]
5 Hb_001616_010 0.1300199948 - - hypothetical protein RCOM_1749890 [Ricinus communis]
6 Hb_017061_010 0.1338820062 - - PREDICTED: protein STRICTOSIDINE SYNTHASE-LIKE 5-like [Jatropha curcas]
7 Hb_034713_010 0.13577941 - - PREDICTED: uncharacterized protein LOC105133378 [Populus euphratica]
8 Hb_001296_010 0.1369829726 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001006_300 0.1379637016 - - lipid binding protein, putative [Ricinus communis]
10 Hb_020831_060 0.1404899487 - - PREDICTED: uncharacterized protein LOC105631088 [Jatropha curcas]
11 Hb_003464_100 0.1438251097 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g68400 [Jatropha curcas]
12 Hb_001898_030 0.144710931 - - protein kinase-coding resistance protein [Nicotiana repanda]
13 Hb_005144_150 0.1459487779 - - hypothetical protein VITISV_013572 [Vitis vinifera]
14 Hb_000236_210 0.1466810684 - - hypothetical protein JCGZ_01083 [Jatropha curcas]
15 Hb_001257_140 0.1466941847 - - Gb:AAF02129.1, putative [Theobroma cacao]
16 Hb_010863_020 0.1481954978 - - PREDICTED: BTB/POZ domain-containing protein At1g03010-like isoform X1 [Jatropha curcas]
17 Hb_001091_040 0.1489801132 - - hypothetical protein JCGZ_01204 [Jatropha curcas]
18 Hb_003858_070 0.1541566274 - - PREDICTED: uncharacterized protein LOC105647879 [Jatropha curcas]
19 Hb_000740_080 0.1557863821 - - -
20 Hb_039946_040 0.155789105 - - PREDICTED: sugar transport protein 14-like [Jatropha curcas]

Gene co-expression network

sample Hb_000220_020 Hb_000220_020 Hb_019299_020 Hb_019299_020 Hb_000220_020--Hb_019299_020 Hb_000139_460 Hb_000139_460 Hb_000220_020--Hb_000139_460 Hb_002304_110 Hb_002304_110 Hb_000220_020--Hb_002304_110 Hb_001616_010 Hb_001616_010 Hb_000220_020--Hb_001616_010 Hb_017061_010 Hb_017061_010 Hb_000220_020--Hb_017061_010 Hb_034713_010 Hb_034713_010 Hb_000220_020--Hb_034713_010 Hb_019299_020--Hb_000139_460 Hb_000740_080 Hb_000740_080 Hb_019299_020--Hb_000740_080 Hb_019299_020--Hb_002304_110 Hb_001257_140 Hb_001257_140 Hb_019299_020--Hb_001257_140 Hb_010863_020 Hb_010863_020 Hb_019299_020--Hb_010863_020 Hb_000352_360 Hb_000352_360 Hb_019299_020--Hb_000352_360 Hb_001091_040 Hb_001091_040 Hb_000139_460--Hb_001091_040 Hb_003371_030 Hb_003371_030 Hb_000139_460--Hb_003371_030 Hb_000139_460--Hb_002304_110 Hb_006351_040 Hb_006351_040 Hb_000139_460--Hb_006351_040 Hb_005144_150 Hb_005144_150 Hb_000139_460--Hb_005144_150 Hb_001898_030 Hb_001898_030 Hb_002304_110--Hb_001898_030 Hb_000813_020 Hb_000813_020 Hb_002304_110--Hb_000813_020 Hb_002304_110--Hb_034713_010 Hb_009367_070 Hb_009367_070 Hb_002304_110--Hb_009367_070 Hb_000334_090 Hb_000334_090 Hb_002304_110--Hb_000334_090 Hb_002304_110--Hb_017061_010 Hb_000086_530 Hb_000086_530 Hb_001616_010--Hb_000086_530 Hb_000071_040 Hb_000071_040 Hb_001616_010--Hb_000071_040 Hb_002020_010 Hb_002020_010 Hb_001616_010--Hb_002020_010 Hb_001616_010--Hb_005144_150 Hb_001616_010--Hb_000139_460 Hb_001006_300 Hb_001006_300 Hb_017061_010--Hb_001006_300 Hb_003858_070 Hb_003858_070 Hb_017061_010--Hb_003858_070 Hb_017061_010--Hb_001898_030 Hb_000964_120 Hb_000964_120 Hb_017061_010--Hb_000964_120 Hb_017061_010--Hb_005144_150 Hb_000497_080 Hb_000497_080 Hb_017061_010--Hb_000497_080 Hb_034713_010--Hb_009367_070 Hb_140627_040 Hb_140627_040 Hb_034713_010--Hb_140627_040 Hb_004705_060 Hb_004705_060 Hb_034713_010--Hb_004705_060 Hb_034713_010--Hb_001898_030 Hb_004112_080 Hb_004112_080 Hb_034713_010--Hb_004112_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.21078 0.48292 1.52593 12.8269 0 0.288916
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.976647 0.651735

CAGE analysis