Hb_002020_010

Information

Type -
Description -
Location Contig2020: 3-4417
Sequence    

Annotation

kegg
ID mtr:MTR_5g024410
description Kinase-like protein
nr
ID ACN87608.1
description kinase-like protein [Corylus avellana]
swissprot
ID -
description -
trembl
ID C7A7N1
description Kinase-like protein (Fragment) OS=Corylus avellana PE=4 SV=1
Gene Ontology
ID GO:0016021
description kinase-like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002020_010 0.0 - - kinase-like protein [Corylus avellana]
2 Hb_000237_060 0.1109822469 - - hypothetical protein PRUPE_ppa022052mg, partial [Prunus persica]
3 Hb_001091_040 0.1143054207 - - hypothetical protein JCGZ_01204 [Jatropha curcas]
4 Hb_000086_530 0.1176668409 - - conserved hypothetical protein [Ricinus communis]
5 Hb_005144_150 0.122763683 - - hypothetical protein VITISV_013572 [Vitis vinifera]
6 Hb_141096_010 0.1264058463 - - PREDICTED: zinc finger CCCH domain-containing protein 55-like [Jatropha curcas]
7 Hb_001856_260 0.1271547846 - - hypothetical protein JCGZ_09061 [Jatropha curcas]
8 Hb_001616_010 0.1277034898 - - hypothetical protein RCOM_1749890 [Ricinus communis]
9 Hb_011081_010 0.1279943916 - - unnamed protein product [Coffea canephora]
10 Hb_000331_630 0.1420006564 - - hypothetical protein B456_008G203900 [Gossypium raimondii]
11 Hb_000614_300 0.1438917651 - - PREDICTED: BAHD acyltransferase At5g47980-like [Jatropha curcas]
12 Hb_000071_040 0.1443061726 - - hypothetical protein POPTR_0001s24580g [Populus trichocarpa]
13 Hb_000789_160 0.1446767142 - - PREDICTED: LOW QUALITY PROTEIN: leucine-rich repeat extensin-like protein 4 [Jatropha curcas]
14 Hb_000163_170 0.1460633166 - - -
15 Hb_001898_030 0.1468482247 - - protein kinase-coding resistance protein [Nicotiana repanda]
16 Hb_000139_460 0.1501367227 - - basic 7S globulin 2 precursor small subunit, putative [Ricinus communis]
17 Hb_002263_050 0.1506801615 - - hypothetical protein POPTR_0016s06160g [Populus trichocarpa]
18 Hb_006351_040 0.1508069393 - - conserved hypothetical protein [Ricinus communis]
19 Hb_164945_030 0.1511339512 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000334_090 0.154868683 - - hypothetical protein JCGZ_16789 [Jatropha curcas]

Gene co-expression network

sample Hb_002020_010 Hb_002020_010 Hb_000237_060 Hb_000237_060 Hb_002020_010--Hb_000237_060 Hb_001091_040 Hb_001091_040 Hb_002020_010--Hb_001091_040 Hb_000086_530 Hb_000086_530 Hb_002020_010--Hb_000086_530 Hb_005144_150 Hb_005144_150 Hb_002020_010--Hb_005144_150 Hb_141096_010 Hb_141096_010 Hb_002020_010--Hb_141096_010 Hb_001856_260 Hb_001856_260 Hb_002020_010--Hb_001856_260 Hb_000237_060--Hb_001856_260 Hb_000237_060--Hb_000086_530 Hb_007237_060 Hb_007237_060 Hb_000237_060--Hb_007237_060 Hb_133926_010 Hb_133926_010 Hb_000237_060--Hb_133926_010 Hb_011081_010 Hb_011081_010 Hb_000237_060--Hb_011081_010 Hb_006351_040 Hb_006351_040 Hb_001091_040--Hb_006351_040 Hb_000139_460 Hb_000139_460 Hb_001091_040--Hb_000139_460 Hb_039946_040 Hb_039946_040 Hb_001091_040--Hb_039946_040 Hb_004926_010 Hb_004926_010 Hb_001091_040--Hb_004926_010 Hb_004031_060 Hb_004031_060 Hb_001091_040--Hb_004031_060 Hb_000086_530--Hb_001856_260 Hb_000327_100 Hb_000327_100 Hb_000086_530--Hb_000327_100 Hb_000086_530--Hb_007237_060 Hb_000086_530--Hb_005144_150 Hb_001616_010 Hb_001616_010 Hb_000086_530--Hb_001616_010 Hb_001257_140 Hb_001257_140 Hb_005144_150--Hb_001257_140 Hb_003858_070 Hb_003858_070 Hb_005144_150--Hb_003858_070 Hb_001006_300 Hb_001006_300 Hb_005144_150--Hb_001006_300 Hb_017061_010 Hb_017061_010 Hb_005144_150--Hb_017061_010 Hb_003849_170 Hb_003849_170 Hb_005144_150--Hb_003849_170 Hb_001898_030 Hb_001898_030 Hb_005144_150--Hb_001898_030 Hb_141096_010--Hb_011081_010 Hb_141096_010--Hb_133926_010 Hb_103468_010 Hb_103468_010 Hb_141096_010--Hb_103468_010 Hb_001557_030 Hb_001557_030 Hb_141096_010--Hb_001557_030 Hb_014834_100 Hb_014834_100 Hb_141096_010--Hb_014834_100 Hb_003152_010 Hb_003152_010 Hb_141096_010--Hb_003152_010 Hb_001856_260--Hb_007237_060 Hb_001856_260--Hb_000327_100 Hb_049438_020 Hb_049438_020 Hb_001856_260--Hb_049438_020 Hb_000163_170 Hb_000163_170 Hb_001856_260--Hb_000163_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.214988 1.75445 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.177441 0.141396

CAGE analysis