Hb_001616_010

Information

Type -
Description -
Location Contig1616: 17793-19091
Sequence    

Annotation

kegg
ID rcu:RCOM_1749890
description hypothetical protein
nr
ID XP_002532735.1
description hypothetical protein RCOM_1749890 [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9T3B6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1749890 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001616_010 0.0 - - hypothetical protein RCOM_1749890 [Ricinus communis]
2 Hb_000086_530 0.1071775926 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000071_040 0.1170070734 - - hypothetical protein POPTR_0001s24580g [Populus trichocarpa]
4 Hb_002020_010 0.1277034898 - - kinase-like protein [Corylus avellana]
5 Hb_000220_020 0.1300199948 - - hypothetical protein CICLE_v10017575mg [Citrus clementina]
6 Hb_005144_150 0.132378265 - - hypothetical protein VITISV_013572 [Vitis vinifera]
7 Hb_000139_460 0.1367603716 - - basic 7S globulin 2 precursor small subunit, putative [Ricinus communis]
8 Hb_003001_050 0.1376028444 - - hypothetical protein RCOM_1749890 [Ricinus communis]
9 Hb_003849_170 0.1394072664 - - hypothetical protein JCGZ_17850 [Jatropha curcas]
10 Hb_001856_260 0.1403678971 - - hypothetical protein JCGZ_09061 [Jatropha curcas]
11 Hb_000163_170 0.1420334944 - - -
12 Hb_001257_140 0.1443112567 - - Gb:AAF02129.1, putative [Theobroma cacao]
13 Hb_019299_020 0.1480657138 - - PREDICTED: putative kinase-like protein TMKL1 [Jatropha curcas]
14 Hb_000237_060 0.1490676809 - - hypothetical protein PRUPE_ppa022052mg, partial [Prunus persica]
15 Hb_000352_360 0.1514545422 - - PREDICTED: 4-coumarate--CoA ligase 1-like [Jatropha curcas]
16 Hb_001091_040 0.1534936921 - - hypothetical protein JCGZ_01204 [Jatropha curcas]
17 Hb_001296_010 0.1541310429 - - conserved hypothetical protein [Ricinus communis]
18 Hb_002701_030 0.1556943856 - - PREDICTED: uncharacterized protein At1g04910 [Jatropha curcas]
19 Hb_017061_010 0.1577838223 - - PREDICTED: protein STRICTOSIDINE SYNTHASE-LIKE 5-like [Jatropha curcas]
20 Hb_002616_020 0.158011725 - - PREDICTED: peroxidase 3 [Jatropha curcas]

Gene co-expression network

sample Hb_001616_010 Hb_001616_010 Hb_000086_530 Hb_000086_530 Hb_001616_010--Hb_000086_530 Hb_000071_040 Hb_000071_040 Hb_001616_010--Hb_000071_040 Hb_002020_010 Hb_002020_010 Hb_001616_010--Hb_002020_010 Hb_000220_020 Hb_000220_020 Hb_001616_010--Hb_000220_020 Hb_005144_150 Hb_005144_150 Hb_001616_010--Hb_005144_150 Hb_000139_460 Hb_000139_460 Hb_001616_010--Hb_000139_460 Hb_001856_260 Hb_001856_260 Hb_000086_530--Hb_001856_260 Hb_000237_060 Hb_000237_060 Hb_000086_530--Hb_000237_060 Hb_000327_100 Hb_000327_100 Hb_000086_530--Hb_000327_100 Hb_007237_060 Hb_007237_060 Hb_000086_530--Hb_007237_060 Hb_000086_530--Hb_005144_150 Hb_001213_060 Hb_001213_060 Hb_000071_040--Hb_001213_060 Hb_000071_040--Hb_002020_010 Hb_085829_010 Hb_085829_010 Hb_000071_040--Hb_085829_010 Hb_000071_040--Hb_000086_530 Hb_000071_040--Hb_001856_260 Hb_002020_010--Hb_000237_060 Hb_001091_040 Hb_001091_040 Hb_002020_010--Hb_001091_040 Hb_002020_010--Hb_000086_530 Hb_002020_010--Hb_005144_150 Hb_141096_010 Hb_141096_010 Hb_002020_010--Hb_141096_010 Hb_002020_010--Hb_001856_260 Hb_019299_020 Hb_019299_020 Hb_000220_020--Hb_019299_020 Hb_000220_020--Hb_000139_460 Hb_002304_110 Hb_002304_110 Hb_000220_020--Hb_002304_110 Hb_017061_010 Hb_017061_010 Hb_000220_020--Hb_017061_010 Hb_034713_010 Hb_034713_010 Hb_000220_020--Hb_034713_010 Hb_001257_140 Hb_001257_140 Hb_005144_150--Hb_001257_140 Hb_003858_070 Hb_003858_070 Hb_005144_150--Hb_003858_070 Hb_001006_300 Hb_001006_300 Hb_005144_150--Hb_001006_300 Hb_005144_150--Hb_017061_010 Hb_003849_170 Hb_003849_170 Hb_005144_150--Hb_003849_170 Hb_001898_030 Hb_001898_030 Hb_005144_150--Hb_001898_030 Hb_000139_460--Hb_019299_020 Hb_000139_460--Hb_001091_040 Hb_003371_030 Hb_003371_030 Hb_000139_460--Hb_003371_030 Hb_000139_460--Hb_002304_110 Hb_006351_040 Hb_006351_040 Hb_000139_460--Hb_006351_040 Hb_000139_460--Hb_005144_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.161533 0.12626 1.60619 13.574 0.0151598 0.150043
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0738509 0.0290478 0 1.49898 1.50923

CAGE analysis