Hb_000237_060

Information

Type -
Description -
Location Contig237: 102435-103789
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa022052mg
description hypothetical protein
nr
ID XP_007226646.1
description hypothetical protein PRUPE_ppa022052mg, partial [Prunus persica]
swissprot
ID -
description -
trembl
ID M5Y7A3
description Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa022052mg PE=4 SV=1
Gene Ontology
ID GO:0003676
description ribonuclease h protein at1g65750

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000237_060 0.0 - - hypothetical protein PRUPE_ppa022052mg, partial [Prunus persica]
2 Hb_001856_260 0.062279553 - - hypothetical protein JCGZ_09061 [Jatropha curcas]
3 Hb_000086_530 0.0892735209 - - conserved hypothetical protein [Ricinus communis]
4 Hb_007237_060 0.1046365294 - - -
5 Hb_002020_010 0.1109822469 - - kinase-like protein [Corylus avellana]
6 Hb_133926_010 0.1242288315 - - hypothetical protein JCGZ_08917 [Jatropha curcas]
7 Hb_011081_010 0.128504698 - - unnamed protein product [Coffea canephora]
8 Hb_000327_100 0.1370455278 - - hypothetical protein JCGZ_06658 [Jatropha curcas]
9 Hb_000034_060 0.1401630869 - - PREDICTED: O-acyltransferase WSD1-like [Citrus sinensis]
10 Hb_141096_010 0.1402128442 - - PREDICTED: zinc finger CCCH domain-containing protein 55-like [Jatropha curcas]
11 Hb_000163_170 0.1453345387 - - -
12 Hb_162815_010 0.1467776733 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
13 Hb_000685_100 0.1479318091 - - hypothetical protein POPTR_0001s10630g [Populus trichocarpa]
14 Hb_001616_010 0.1490676809 - - hypothetical protein RCOM_1749890 [Ricinus communis]
15 Hb_001210_120 0.1493484179 - - hypothetical protein JCGZ_06226 [Jatropha curcas]
16 Hb_049438_020 0.1576209056 - - PREDICTED: peroxidase 20 [Jatropha curcas]
17 Hb_005144_150 0.1595602167 - - hypothetical protein VITISV_013572 [Vitis vinifera]
18 Hb_001091_040 0.1606070284 - - hypothetical protein JCGZ_01204 [Jatropha curcas]
19 Hb_001675_020 0.1612119882 - - -
20 Hb_000659_050 0.164756277 - - PREDICTED: basic blue protein-like [Jatropha curcas]

Gene co-expression network

sample Hb_000237_060 Hb_000237_060 Hb_001856_260 Hb_001856_260 Hb_000237_060--Hb_001856_260 Hb_000086_530 Hb_000086_530 Hb_000237_060--Hb_000086_530 Hb_007237_060 Hb_007237_060 Hb_000237_060--Hb_007237_060 Hb_002020_010 Hb_002020_010 Hb_000237_060--Hb_002020_010 Hb_133926_010 Hb_133926_010 Hb_000237_060--Hb_133926_010 Hb_011081_010 Hb_011081_010 Hb_000237_060--Hb_011081_010 Hb_001856_260--Hb_000086_530 Hb_001856_260--Hb_007237_060 Hb_000327_100 Hb_000327_100 Hb_001856_260--Hb_000327_100 Hb_049438_020 Hb_049438_020 Hb_001856_260--Hb_049438_020 Hb_000163_170 Hb_000163_170 Hb_001856_260--Hb_000163_170 Hb_000086_530--Hb_000327_100 Hb_000086_530--Hb_007237_060 Hb_005144_150 Hb_005144_150 Hb_000086_530--Hb_005144_150 Hb_001616_010 Hb_001616_010 Hb_000086_530--Hb_001616_010 Hb_001675_020 Hb_001675_020 Hb_007237_060--Hb_001675_020 Hb_007237_060--Hb_000327_100 Hb_000685_100 Hb_000685_100 Hb_007237_060--Hb_000685_100 Hb_001091_040 Hb_001091_040 Hb_002020_010--Hb_001091_040 Hb_002020_010--Hb_000086_530 Hb_002020_010--Hb_005144_150 Hb_141096_010 Hb_141096_010 Hb_002020_010--Hb_141096_010 Hb_002020_010--Hb_001856_260 Hb_133926_010--Hb_011081_010 Hb_133926_010--Hb_141096_010 Hb_180518_010 Hb_180518_010 Hb_133926_010--Hb_180518_010 Hb_103468_010 Hb_103468_010 Hb_133926_010--Hb_103468_010 Hb_027577_010 Hb_027577_010 Hb_133926_010--Hb_027577_010 Hb_000868_020 Hb_000868_020 Hb_133926_010--Hb_000868_020 Hb_011081_010--Hb_141096_010 Hb_011081_010--Hb_103468_010 Hb_014834_100 Hb_014834_100 Hb_011081_010--Hb_014834_100 Hb_011081_010--Hb_180518_010 Hb_001557_030 Hb_001557_030 Hb_011081_010--Hb_001557_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0269395 0.462073 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0631538 0.065302

CAGE analysis