Hb_141096_010

Information

Type -
Description -
Location Contig141096: 297-763
Sequence    

Annotation

kegg
ID rcu:RCOM_1578730
description nucleic acid binding protein, putative
nr
ID XP_012090042.1
description PREDICTED: zinc finger CCCH domain-containing protein 55-like [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JE29
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25952 PE=4 SV=1
Gene Ontology
ID GO:0003676
description zinc finger ccch domain-containing protein 55-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_141096_010 0.0 - - PREDICTED: zinc finger CCCH domain-containing protein 55-like [Jatropha curcas]
2 Hb_011081_010 0.0172165979 - - unnamed protein product [Coffea canephora]
3 Hb_133926_010 0.0610050232 - - hypothetical protein JCGZ_08917 [Jatropha curcas]
4 Hb_103468_010 0.0841561476 - - protein binding protein, putative [Ricinus communis]
5 Hb_001557_030 0.0971416441 - - hypothetical protein CICLE_v10005306mg [Citrus clementina]
6 Hb_014834_100 0.098144465 - - PREDICTED: probable aquaporin TIP-type [Gossypium raimondii]
7 Hb_003152_010 0.1050659492 - - -
8 Hb_000868_020 0.1136968907 - - -
9 Hb_005291_020 0.1154629307 - - conserved hypothetical protein [Ricinus communis]
10 Hb_180518_010 0.1175811681 - - PREDICTED: receptor-like protein 2 [Jatropha curcas]
11 Hb_003060_020 0.1176005996 - - serine carboxypeptidase, putative [Ricinus communis]
12 Hb_003528_090 0.1188376858 - - Uncharacterized protein TCM_037169 [Theobroma cacao]
13 Hb_015183_090 0.1190467956 - - PREDICTED: 3-ketoacyl-CoA synthase 21-like [Jatropha curcas]
14 Hb_001433_230 0.1229294826 - - PREDICTED: kinesin-4-like [Jatropha curcas]
15 Hb_002020_010 0.1264058463 - - kinase-like protein [Corylus avellana]
16 Hb_027577_010 0.1274856683 - - PREDICTED: uncharacterized protein LOC104779928 [Camelina sativa]
17 Hb_000107_240 0.1279369461 - - organic anion transporter, putative [Ricinus communis]
18 Hb_150179_010 0.1280816227 - - hypothetical protein JCGZ_21079 [Jatropha curcas]
19 Hb_000614_300 0.1281625675 - - PREDICTED: BAHD acyltransferase At5g47980-like [Jatropha curcas]
20 Hb_001887_010 0.1303816459 - - mta/sah nucleosidase, putative [Ricinus communis]

Gene co-expression network

sample Hb_141096_010 Hb_141096_010 Hb_011081_010 Hb_011081_010 Hb_141096_010--Hb_011081_010 Hb_133926_010 Hb_133926_010 Hb_141096_010--Hb_133926_010 Hb_103468_010 Hb_103468_010 Hb_141096_010--Hb_103468_010 Hb_001557_030 Hb_001557_030 Hb_141096_010--Hb_001557_030 Hb_014834_100 Hb_014834_100 Hb_141096_010--Hb_014834_100 Hb_003152_010 Hb_003152_010 Hb_141096_010--Hb_003152_010 Hb_011081_010--Hb_133926_010 Hb_011081_010--Hb_103468_010 Hb_011081_010--Hb_014834_100 Hb_180518_010 Hb_180518_010 Hb_011081_010--Hb_180518_010 Hb_011081_010--Hb_001557_030 Hb_133926_010--Hb_180518_010 Hb_133926_010--Hb_103468_010 Hb_027577_010 Hb_027577_010 Hb_133926_010--Hb_027577_010 Hb_000868_020 Hb_000868_020 Hb_133926_010--Hb_000868_020 Hb_003060_020 Hb_003060_020 Hb_103468_010--Hb_003060_020 Hb_103468_010--Hb_014834_100 Hb_006249_010 Hb_006249_010 Hb_103468_010--Hb_006249_010 Hb_103468_010--Hb_027577_010 Hb_103468_010--Hb_000868_020 Hb_103468_010--Hb_180518_010 Hb_150179_010 Hb_150179_010 Hb_001557_030--Hb_150179_010 Hb_001557_030--Hb_014834_100 Hb_011224_030 Hb_011224_030 Hb_001557_030--Hb_011224_030 Hb_007007_140 Hb_007007_140 Hb_001557_030--Hb_007007_140 Hb_001887_010 Hb_001887_010 Hb_001557_030--Hb_001887_010 Hb_029584_030 Hb_029584_030 Hb_001557_030--Hb_029584_030 Hb_014834_100--Hb_011224_030 Hb_001433_230 Hb_001433_230 Hb_014834_100--Hb_001433_230 Hb_014834_100--Hb_150179_010 Hb_002073_210 Hb_002073_210 Hb_014834_100--Hb_002073_210 Hb_006889_010 Hb_006889_010 Hb_003152_010--Hb_006889_010 Hb_000352_210 Hb_000352_210 Hb_003152_010--Hb_000352_210 Hb_006970_180 Hb_006970_180 Hb_003152_010--Hb_006970_180 Hb_003152_010--Hb_002073_210 Hb_151436_010 Hb_151436_010 Hb_003152_010--Hb_151436_010 Hb_000431_050 Hb_000431_050 Hb_003152_010--Hb_000431_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.257998 3.87313 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.123207 0.422071

CAGE analysis