Hb_003536_090

Information

Type -
Description -
Location Contig3536: 98090-102153
Sequence    

Annotation

kegg
ID rcu:RCOM_0851910
description transferase, transferring glycosyl groups, putative (EC:2.4.1.12)
nr
ID XP_002517383.1
description transferase, transferring glycosyl groups, putative [Ricinus communis]
swissprot
ID Q9LJP4
description Xyloglucan glycosyltransferase 4 OS=Arabidopsis thaliana GN=CSLC4 PE=1 SV=1
trembl
ID B9RUD8
description Transferase, transferring glycosyl groups, putative OS=Ricinus communis GN=RCOM_0851910 PE=4 SV=1
Gene Ontology
ID GO:0005768
description xyloglucan glycosyltransferase 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36682: 99647-100908 , PASA_asmbl_36683: 101418-101677
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003536_090 0.0 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
2 Hb_002164_010 0.1220566853 - - Stellacyanin, putative [Ricinus communis]
3 Hb_000236_210 0.1880446818 - - hypothetical protein JCGZ_01083 [Jatropha curcas]
4 Hb_017434_080 0.1925251963 - - conserved hypothetical protein [Ricinus communis]
5 Hb_020831_060 0.1929465852 - - PREDICTED: uncharacterized protein LOC105631088 [Jatropha curcas]
6 Hb_001269_100 0.1955154282 - - plasma membrane ATPase 1, partial [Triticum aestivum]
7 Hb_000302_100 0.1965855558 - - PREDICTED: uncharacterized protein LOC105766209 [Gossypium raimondii]
8 Hb_000206_270 0.2013015235 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
9 Hb_000635_020 0.2026542885 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000413_080 0.202717081 - - -
11 Hb_004925_030 0.2073469 - - EXORDIUM like 1 [Theobroma cacao]
12 Hb_000375_140 0.2073965147 - - PREDICTED: monoacylglycerol lipase ABHD6 [Jatropha curcas]
13 Hb_001329_020 0.210034837 - - PREDICTED: probable boron transporter 2 [Populus euphratica]
14 Hb_006538_160 0.2112467975 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001810_040 0.2123952118 - - -
16 Hb_000011_260 0.2138303574 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000015_140 0.2153628716 - - PREDICTED: CASP-like protein 4C1 [Vitis vinifera]
18 Hb_000563_140 0.2182039393 - - PREDICTED: probable polygalacturonase [Jatropha curcas]
19 Hb_000069_560 0.2186232654 - - hypothetical protein POPTR_0002s16980g [Populus trichocarpa]
20 Hb_000000_300 0.221568331 - - PREDICTED: pathogenesis-related protein 5 [Jatropha curcas]

Gene co-expression network

sample Hb_003536_090 Hb_003536_090 Hb_002164_010 Hb_002164_010 Hb_003536_090--Hb_002164_010 Hb_000236_210 Hb_000236_210 Hb_003536_090--Hb_000236_210 Hb_017434_080 Hb_017434_080 Hb_003536_090--Hb_017434_080 Hb_020831_060 Hb_020831_060 Hb_003536_090--Hb_020831_060 Hb_001269_100 Hb_001269_100 Hb_003536_090--Hb_001269_100 Hb_000302_100 Hb_000302_100 Hb_003536_090--Hb_000302_100 Hb_002164_010--Hb_000236_210 Hb_000375_140 Hb_000375_140 Hb_002164_010--Hb_000375_140 Hb_002164_010--Hb_001269_100 Hb_002164_010--Hb_020831_060 Hb_000816_190 Hb_000816_190 Hb_002164_010--Hb_000816_190 Hb_003464_100 Hb_003464_100 Hb_000236_210--Hb_003464_100 Hb_000635_020 Hb_000635_020 Hb_000236_210--Hb_000635_020 Hb_000236_210--Hb_020831_060 Hb_003893_060 Hb_003893_060 Hb_000236_210--Hb_003893_060 Hb_019299_020 Hb_019299_020 Hb_000236_210--Hb_019299_020 Hb_000220_020 Hb_000220_020 Hb_000236_210--Hb_000220_020 Hb_004586_410 Hb_004586_410 Hb_017434_080--Hb_004586_410 Hb_007311_050 Hb_007311_050 Hb_017434_080--Hb_007311_050 Hb_000030_130 Hb_000030_130 Hb_017434_080--Hb_000030_130 Hb_005914_130 Hb_005914_130 Hb_017434_080--Hb_005914_130 Hb_008695_220 Hb_008695_220 Hb_017434_080--Hb_008695_220 Hb_000011_260 Hb_000011_260 Hb_020831_060--Hb_000011_260 Hb_004970_100 Hb_004970_100 Hb_020831_060--Hb_004970_100 Hb_020831_060--Hb_019299_020 Hb_000000_300 Hb_000000_300 Hb_020831_060--Hb_000000_300 Hb_003777_150 Hb_003777_150 Hb_020831_060--Hb_003777_150 Hb_001269_100--Hb_020831_060 Hb_001269_100--Hb_000236_210 Hb_001269_100--Hb_003893_060 Hb_001269_100--Hb_003464_100 Hb_140627_040 Hb_140627_040 Hb_001269_100--Hb_140627_040 Hb_066514_010 Hb_066514_010 Hb_000302_100--Hb_066514_010 Hb_002272_200 Hb_002272_200 Hb_000302_100--Hb_002272_200 Hb_001357_030 Hb_001357_030 Hb_000302_100--Hb_001357_030 Hb_160405_010 Hb_160405_010 Hb_000302_100--Hb_160405_010 Hb_007575_090 Hb_007575_090 Hb_000302_100--Hb_007575_090 Hb_001329_020 Hb_001329_020 Hb_000302_100--Hb_001329_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.727717 0.763806 0.76765 7.56258 0.111241 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.302694 0.204147 0.0322935 0.392415 0.503905

CAGE analysis