Hb_103942_030

Information

Type -
Description -
Location Contig103942: 10165-24698
Sequence    

Annotation

kegg
ID rcu:RCOM_1353380
description protein with unknown function (EC:3.1.4.12)
nr
ID XP_002519452.1
description protein with unknown function [Ricinus communis]
swissprot
ID O49841
description Ras-related protein RABC2a OS=Arabidopsis thaliana GN=RABC2A PE=1 SV=1
trembl
ID B9S0D3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1353380 PE=3 SV=1
Gene Ontology
ID GO:0005777
description ras-related protein rabc2a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01448: 7384-10598 , PASA_asmbl_01449: 16379-19129
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_103942_030 0.0 - - protein with unknown function [Ricinus communis]
2 Hb_002893_030 0.1250955578 - - PREDICTED: 3-ketoacyl-CoA synthase 11-like [Populus euphratica]
3 Hb_010883_180 0.1318055871 transcription factor TF Family: CSD PREDICTED: glycine-rich protein 2-like [Jatropha curcas]
4 Hb_000260_110 0.1404357752 - - Nodulation receptor kinase precursor, putative [Ricinus communis]
5 Hb_000389_040 0.1462442719 - - PREDICTED: BTB/POZ domain-containing protein At5g03250-like [Jatropha curcas]
6 Hb_004007_070 0.1499273108 - - adenylsulfate kinase, putative [Ricinus communis]
7 Hb_000086_090 0.153324604 - - PREDICTED: U-box domain-containing protein 3 [Jatropha curcas]
8 Hb_000098_170 0.1537289006 - - hypothetical protein JCGZ_06491 [Jatropha curcas]
9 Hb_188281_010 0.1620802213 - - carboxylic ester hydrolase, putative [Ricinus communis]
10 Hb_000069_560 0.1668773739 - - hypothetical protein POPTR_0002s16980g [Populus trichocarpa]
11 Hb_000540_160 0.1715932574 - - PREDICTED: mitogen-activated protein kinase homolog NTF6 [Jatropha curcas]
12 Hb_001102_160 0.1753096309 - - PREDICTED: galacturonokinase [Jatropha curcas]
13 Hb_012395_110 0.1758534399 - - PREDICTED: peroxygenase [Jatropha curcas]
14 Hb_002316_080 0.1773858389 - - PREDICTED: RING-H2 finger protein ATL46-like [Populus euphratica]
15 Hb_000049_270 0.1786778165 - - PREDICTED: receptor-like serine/threonine-protein kinase ALE2 isoform X1 [Jatropha curcas]
16 Hb_002900_180 0.182714843 transcription factor TF Family: LIM LIM1 [Hevea brasiliensis]
17 Hb_000365_280 0.1864953881 - - calcium binding protein/cast, putative [Ricinus communis]
18 Hb_002490_030 0.1904058913 - - conserved hypothetical protein [Ricinus communis]
19 Hb_004109_210 0.1923381989 - - PREDICTED: 9-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic-like [Jatropha curcas]
20 Hb_000462_070 0.1947744489 - - PREDICTED: probable pectinesterase 15 [Jatropha curcas]

Gene co-expression network

sample Hb_103942_030 Hb_103942_030 Hb_002893_030 Hb_002893_030 Hb_103942_030--Hb_002893_030 Hb_010883_180 Hb_010883_180 Hb_103942_030--Hb_010883_180 Hb_000260_110 Hb_000260_110 Hb_103942_030--Hb_000260_110 Hb_000389_040 Hb_000389_040 Hb_103942_030--Hb_000389_040 Hb_004007_070 Hb_004007_070 Hb_103942_030--Hb_004007_070 Hb_000086_090 Hb_000086_090 Hb_103942_030--Hb_000086_090 Hb_002893_030--Hb_004007_070 Hb_000365_280 Hb_000365_280 Hb_002893_030--Hb_000365_280 Hb_188281_010 Hb_188281_010 Hb_002893_030--Hb_188281_010 Hb_012395_110 Hb_012395_110 Hb_002893_030--Hb_012395_110 Hb_002026_050 Hb_002026_050 Hb_002893_030--Hb_002026_050 Hb_002316_080 Hb_002316_080 Hb_010883_180--Hb_002316_080 Hb_030565_100 Hb_030565_100 Hb_010883_180--Hb_030565_100 Hb_010883_180--Hb_000260_110 Hb_000054_010 Hb_000054_010 Hb_010883_180--Hb_000054_010 Hb_010883_180--Hb_000086_090 Hb_002233_160 Hb_002233_160 Hb_000260_110--Hb_002233_160 Hb_000011_280 Hb_000011_280 Hb_000260_110--Hb_000011_280 Hb_002900_180 Hb_002900_180 Hb_000260_110--Hb_002900_180 Hb_000069_560 Hb_000069_560 Hb_000260_110--Hb_000069_560 Hb_000462_070 Hb_000462_070 Hb_000260_110--Hb_000462_070 Hb_000995_020 Hb_000995_020 Hb_000389_040--Hb_000995_020 Hb_133279_010 Hb_133279_010 Hb_000389_040--Hb_133279_010 Hb_011861_090 Hb_011861_090 Hb_000389_040--Hb_011861_090 Hb_000389_040--Hb_010883_180 Hb_102772_010 Hb_102772_010 Hb_000389_040--Hb_102772_010 Hb_004007_070--Hb_012395_110 Hb_000098_170 Hb_000098_170 Hb_004007_070--Hb_000098_170 Hb_004007_070--Hb_000086_090 Hb_000049_270 Hb_000049_270 Hb_004007_070--Hb_000049_270 Hb_004007_070--Hb_000365_280 Hb_000086_090--Hb_000098_170 Hb_000086_090--Hb_012395_110 Hb_001102_160 Hb_001102_160 Hb_000086_090--Hb_001102_160 Hb_000349_200 Hb_000349_200 Hb_000086_090--Hb_000349_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.488909 3.19755 6.49194 25.4616 0.372058 0.215741
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.677013 0.36737 2.92349 0.862577 3.76204

CAGE analysis