Hb_000805_140

Information

Type transcription factor
Description TF Family: GRAS
Location Contig805: 94798-96846
Sequence    

Annotation

kegg
ID rcu:RCOM_0300290
description Chitin-inducible gibberellin-responsive protein, putative
nr
ID XP_002533748.1
description Chitin-inducible gibberellin-responsive protein, putative [Ricinus communis]
swissprot
ID Q9FL03
description Scarecrow-like protein 4 OS=Arabidopsis thaliana GN=SCL4 PE=2 SV=1
trembl
ID B9T679
description Chitin-inducible gibberellin-responsive protein, putative OS=Ricinus communis GN=RCOM_0300290 PE=4 SV=1
Gene Ontology
ID GO:0006351
description scarecrow-like protein 14

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000805_140 0.0 transcription factor TF Family: GRAS Chitin-inducible gibberellin-responsive protein, putative [Ricinus communis]
2 Hb_005539_140 0.1473892667 - - PREDICTED: U-box domain-containing protein 19-like [Jatropha curcas]
3 Hb_000300_230 0.1528511564 - - PREDICTED: cation/calcium exchanger 2 [Jatropha curcas]
4 Hb_030565_050 0.1608485892 - - UDP-D-GLUCURONATE 4-EPIMERASE 6 family protein [Populus trichocarpa]
5 Hb_000797_060 0.1616188657 - - PREDICTED: subtilisin-like protease SBT1.7 [Jatropha curcas]
6 Hb_007483_060 0.1629167149 desease resistance Gene Name: ABC_membrane multidrug resistance protein 1, 2, putative [Ricinus communis]
7 Hb_000330_020 0.164303347 - - PREDICTED: isoflavone reductase-like protein [Jatropha curcas]
8 Hb_000098_170 0.1710880347 - - hypothetical protein JCGZ_06491 [Jatropha curcas]
9 Hb_000069_560 0.1713669365 - - hypothetical protein POPTR_0002s16980g [Populus trichocarpa]
10 Hb_000365_280 0.1719256462 - - calcium binding protein/cast, putative [Ricinus communis]
11 Hb_000030_130 0.1772206206 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
12 Hb_004007_070 0.1784833792 - - adenylsulfate kinase, putative [Ricinus communis]
13 Hb_000226_070 0.1797604195 - - PREDICTED: pyrophosphate-energized vacuolar membrane proton pump [Jatropha curcas]
14 Hb_104571_010 0.1798136211 - - PREDICTED: metal transporter Nramp1 [Jatropha curcas]
15 Hb_000455_070 0.1800891518 - - PREDICTED: LOW QUALITY PROTEIN: carboxymethylenebutenolidase homolog [Jatropha curcas]
16 Hb_000246_130 0.1930326642 - - tubulin alpha chain, putative [Ricinus communis]
17 Hb_054865_160 0.1936464723 - - PREDICTED: D-arabinono-1,4-lactone oxidase-like [Jatropha curcas]
18 Hb_004449_090 0.1940419884 - - PREDICTED: CO(2)-response secreted protease-like [Jatropha curcas]
19 Hb_000056_190 0.1962675054 - - hypothetical protein [Ricinus communis]
20 Hb_000086_090 0.1964268476 - - PREDICTED: U-box domain-containing protein 3 [Jatropha curcas]

Gene co-expression network

sample Hb_000805_140 Hb_000805_140 Hb_005539_140 Hb_005539_140 Hb_000805_140--Hb_005539_140 Hb_000300_230 Hb_000300_230 Hb_000805_140--Hb_000300_230 Hb_030565_050 Hb_030565_050 Hb_000805_140--Hb_030565_050 Hb_000797_060 Hb_000797_060 Hb_000805_140--Hb_000797_060 Hb_007483_060 Hb_007483_060 Hb_000805_140--Hb_007483_060 Hb_000330_020 Hb_000330_020 Hb_000805_140--Hb_000330_020 Hb_005489_150 Hb_005489_150 Hb_005539_140--Hb_005489_150 Hb_000479_060 Hb_000479_060 Hb_005539_140--Hb_000479_060 Hb_005539_140--Hb_030565_050 Hb_000455_070 Hb_000455_070 Hb_005539_140--Hb_000455_070 Hb_000030_130 Hb_000030_130 Hb_005539_140--Hb_000030_130 Hb_000109_190 Hb_000109_190 Hb_005539_140--Hb_000109_190 Hb_000300_230--Hb_000797_060 Hb_002289_150 Hb_002289_150 Hb_000300_230--Hb_002289_150 Hb_001754_060 Hb_001754_060 Hb_000300_230--Hb_001754_060 Hb_004449_090 Hb_004449_090 Hb_000300_230--Hb_004449_090 Hb_000138_060 Hb_000138_060 Hb_000300_230--Hb_000138_060 Hb_000300_230--Hb_005489_150 Hb_014361_090 Hb_014361_090 Hb_030565_050--Hb_014361_090 Hb_030565_050--Hb_004449_090 Hb_000684_220 Hb_000684_220 Hb_030565_050--Hb_000684_220 Hb_000176_080 Hb_000176_080 Hb_030565_050--Hb_000176_080 Hb_000603_020 Hb_000603_020 Hb_030565_050--Hb_000603_020 Hb_000797_060--Hb_002289_150 Hb_000797_060--Hb_001754_060 Hb_000797_060--Hb_000109_190 Hb_000797_060--Hb_000138_060 Hb_000797_060--Hb_005489_150 Hb_000177_110 Hb_000177_110 Hb_007483_060--Hb_000177_110 Hb_002316_080 Hb_002316_080 Hb_007483_060--Hb_002316_080 Hb_000098_170 Hb_000098_170 Hb_007483_060--Hb_000098_170 Hb_118939_010 Hb_118939_010 Hb_007483_060--Hb_118939_010 Hb_003207_150 Hb_003207_150 Hb_007483_060--Hb_003207_150 Hb_053709_040 Hb_053709_040 Hb_007483_060--Hb_053709_040 Hb_000056_190 Hb_000056_190 Hb_000330_020--Hb_000056_190 Hb_000330_020--Hb_000684_220 Hb_000330_020--Hb_030565_050 Hb_012762_060 Hb_012762_060 Hb_000330_020--Hb_012762_060 Hb_003680_030 Hb_003680_030 Hb_000330_020--Hb_003680_030 Hb_000844_030 Hb_000844_030 Hb_000330_020--Hb_000844_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.260285 0.788805 0.457905 3.45937 0.251331 0.103967
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0659136 0.15559 0.229629 0.0825152 0.767781

CAGE analysis