Hb_001369_500

Information

Type -
Description -
Location Contig1369: 425668-428446
Sequence    

Annotation

kegg
ID rcu:RCOM_1500170
description endo-1,4-beta-glucanase, putative (EC:3.2.1.4)
nr
ID XP_002510938.1
description endo-1,4-beta-glucanase, putative [Ricinus communis]
swissprot
ID Q9CAC1
description Endoglucanase 8 OS=Arabidopsis thaliana GN=CEL1 PE=2 SV=1
trembl
ID B9R9R3
description Endoglucanase OS=Ricinus communis GN=RCOM_1500170 PE=3 SV=1
Gene Ontology
ID GO:0008810
description endoglucanase 4-like isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001369_500 0.0 - - endo-1,4-beta-glucanase, putative [Ricinus communis]
2 Hb_004308_020 0.2031315071 - - hypothetical protein POPTR_0005s15590g [Populus trichocarpa]
3 Hb_001810_040 0.2133881229 - - -
4 Hb_002320_050 0.2136406486 - - clathrin assembly family protein [Populus trichocarpa]
5 Hb_153774_010 0.2148613795 - - conserved hypothetical protein [Ricinus communis]
6 Hb_126711_010 0.2155684266 - - JAZ10 [Hevea brasiliensis]
7 Hb_000358_130 0.2170269161 - - PREDICTED: sugar transport protein 14-like [Jatropha curcas]
8 Hb_002759_270 0.2197762606 - - Nectarin-1 precursor, putative [Ricinus communis]
9 Hb_009010_040 0.2313429641 - - Peptide transporter, putative [Ricinus communis]
10 Hb_002309_030 0.2352586139 - - Glycerol dehydrogenase large subunit, putative [Theobroma cacao]
11 Hb_006469_110 0.2367646843 - - hypothetical protein JCGZ_12008 [Jatropha curcas]
12 Hb_001998_100 0.2394541178 - - -
13 Hb_001431_100 0.2440101202 - - PREDICTED: probable protein phosphatase 2C 27 [Jatropha curcas]
14 Hb_000995_020 0.2442932415 - - conserved hypothetical protein [Ricinus communis]
15 Hb_003226_130 0.2454937542 - - PREDICTED: indole-3-acetic acid-induced protein ARG2-like [Jatropha curcas]
16 Hb_000028_260 0.2462791032 - - hypothetical protein glysoja_041948 [Glycine soja]
17 Hb_002925_040 0.2518819665 desease resistance Gene Name: TIR hypothetical protein JCGZ_01545 [Jatropha curcas]
18 Hb_011671_350 0.2546680553 - - PREDICTED: uncharacterized protein LOC105648659 [Jatropha curcas]
19 Hb_000062_200 0.2547204696 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
20 Hb_007382_130 0.2570262024 - - glycerophosphodiester phosphodiesterase, putative [Ricinus communis]

Gene co-expression network

sample Hb_001369_500 Hb_001369_500 Hb_004308_020 Hb_004308_020 Hb_001369_500--Hb_004308_020 Hb_001810_040 Hb_001810_040 Hb_001369_500--Hb_001810_040 Hb_002320_050 Hb_002320_050 Hb_001369_500--Hb_002320_050 Hb_153774_010 Hb_153774_010 Hb_001369_500--Hb_153774_010 Hb_126711_010 Hb_126711_010 Hb_001369_500--Hb_126711_010 Hb_000358_130 Hb_000358_130 Hb_001369_500--Hb_000358_130 Hb_004308_020--Hb_001810_040 Hb_000352_240 Hb_000352_240 Hb_004308_020--Hb_000352_240 Hb_001431_100 Hb_001431_100 Hb_004308_020--Hb_001431_100 Hb_006469_110 Hb_006469_110 Hb_004308_020--Hb_006469_110 Hb_002309_030 Hb_002309_030 Hb_004308_020--Hb_002309_030 Hb_023768_010 Hb_023768_010 Hb_001810_040--Hb_023768_010 Hb_001810_040--Hb_002320_050 Hb_000470_060 Hb_000470_060 Hb_001810_040--Hb_000470_060 Hb_002277_020 Hb_002277_020 Hb_001810_040--Hb_002277_020 Hb_000429_080 Hb_000429_080 Hb_001810_040--Hb_000429_080 Hb_029508_040 Hb_029508_040 Hb_002320_050--Hb_029508_040 Hb_002925_040 Hb_002925_040 Hb_002320_050--Hb_002925_040 Hb_000186_090 Hb_000186_090 Hb_002320_050--Hb_000186_090 Hb_005356_050 Hb_005356_050 Hb_002320_050--Hb_005356_050 Hb_074100_010 Hb_074100_010 Hb_002320_050--Hb_074100_010 Hb_001998_100 Hb_001998_100 Hb_153774_010--Hb_001998_100 Hb_009010_040 Hb_009010_040 Hb_153774_010--Hb_009010_040 Hb_009111_060 Hb_009111_060 Hb_153774_010--Hb_009111_060 Hb_002759_270 Hb_002759_270 Hb_153774_010--Hb_002759_270 Hb_153774_010--Hb_005356_050 Hb_153774_010--Hb_002925_040 Hb_123301_010 Hb_123301_010 Hb_126711_010--Hb_123301_010 Hb_001329_030 Hb_001329_030 Hb_126711_010--Hb_001329_030 Hb_000062_200 Hb_000062_200 Hb_126711_010--Hb_000062_200 Hb_000313_280 Hb_000313_280 Hb_126711_010--Hb_000313_280 Hb_000649_340 Hb_000649_340 Hb_126711_010--Hb_000649_340 Hb_001396_080 Hb_001396_080 Hb_000358_130--Hb_001396_080 Hb_003226_130 Hb_003226_130 Hb_000358_130--Hb_003226_130 Hb_000358_130--Hb_005356_050 Hb_000358_130--Hb_009010_040 Hb_000723_210 Hb_000723_210 Hb_000358_130--Hb_000723_210 Hb_000358_130--Hb_000352_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0473628 0.0838349 0.562883 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0310148 0.0244002 0.0458536 0 0

CAGE analysis