Hb_002759_270

Information

Type -
Description -
Location Contig2759: 248670-249221
Sequence    

Annotation

kegg
ID rcu:RCOM_0699790
description Nectarin-1 precursor, putative (EC:1.15.1.1)
nr
ID XP_002520204.1
description Nectarin-1 precursor, putative [Ricinus communis]
swissprot
ID P92998
description Germin-like protein subfamily 1 member 1 OS=Arabidopsis thaliana GN=GLP7 PE=2 SV=2
trembl
ID B9S2I5
description Nectarin-1, putative OS=Ricinus communis GN=RCOM_0699790 PE=4 SV=1
Gene Ontology
ID GO:0030145
description germin-like protein subfamily 1 member 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002759_270 0.0 - - Nectarin-1 precursor, putative [Ricinus communis]
2 Hb_104362_020 0.1414845521 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
3 Hb_179367_010 0.14406531 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
4 Hb_151027_010 0.1447844097 - - (+)-delta-cadinene synthase isozyme A, putative [Ricinus communis]
5 Hb_002014_120 0.1500438799 transcription factor TF Family: OFP PREDICTED: transcription repressor OFP8 [Populus euphratica]
6 Hb_000174_130 0.1508185084 - - flowering locus T-like protein [Fagus crenata]
7 Hb_004652_040 0.1511695864 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
8 Hb_000352_020 0.1514239981 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor LEP [Jatropha curcas]
9 Hb_001006_080 0.1522747591 - - hypothetical protein JCGZ_04862 [Jatropha curcas]
10 Hb_009838_030 0.1534656912 - - Tetratricopeptide repeat-like superfamily protein [Theobroma cacao]
11 Hb_174829_030 0.1539549246 - - conserved hypothetical protein [Ricinus communis]
12 Hb_103000_010 0.1542351972 - - hypothetical protein POPTR_0007s02210g [Populus trichocarpa]
13 Hb_166700_010 0.1563980756 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
14 Hb_003337_010 0.1605422687 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000696_120 0.1618126862 - - PREDICTED: protein FD [Populus euphratica]
16 Hb_010080_040 0.1642373081 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001948_100 0.1668611473 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001006_130 0.1670826049 - - PREDICTED: transcription factor bHLH111 [Jatropha curcas]
19 Hb_003878_130 0.1682298226 - - -
20 Hb_005428_010 0.173286687 - - cytochrome P450, putative [Ricinus communis]

Gene co-expression network

sample Hb_002759_270 Hb_002759_270 Hb_104362_020 Hb_104362_020 Hb_002759_270--Hb_104362_020 Hb_179367_010 Hb_179367_010 Hb_002759_270--Hb_179367_010 Hb_151027_010 Hb_151027_010 Hb_002759_270--Hb_151027_010 Hb_002014_120 Hb_002014_120 Hb_002759_270--Hb_002014_120 Hb_000174_130 Hb_000174_130 Hb_002759_270--Hb_000174_130 Hb_004652_040 Hb_004652_040 Hb_002759_270--Hb_004652_040 Hb_104362_020--Hb_179367_010 Hb_104362_020--Hb_151027_010 Hb_104362_020--Hb_000174_130 Hb_104362_020--Hb_002014_120 Hb_104362_020--Hb_004652_040 Hb_103000_010 Hb_103000_010 Hb_104362_020--Hb_103000_010 Hb_179367_010--Hb_002014_120 Hb_179367_010--Hb_004652_040 Hb_179367_010--Hb_103000_010 Hb_179367_010--Hb_000174_130 Hb_179367_010--Hb_151027_010 Hb_151027_010--Hb_000174_130 Hb_166700_010 Hb_166700_010 Hb_151027_010--Hb_166700_010 Hb_174829_030 Hb_174829_030 Hb_151027_010--Hb_174829_030 Hb_151027_010--Hb_004652_040 Hb_002014_120--Hb_004652_040 Hb_002014_120--Hb_103000_010 Hb_003337_010 Hb_003337_010 Hb_002014_120--Hb_003337_010 Hb_009838_030 Hb_009838_030 Hb_002014_120--Hb_009838_030 Hb_001948_100 Hb_001948_100 Hb_002014_120--Hb_001948_100 Hb_000174_130--Hb_166700_010 Hb_000174_130--Hb_103000_010 Hb_000174_130--Hb_004652_040 Hb_004652_040--Hb_103000_010 Hb_004652_040--Hb_003337_010 Hb_004652_040--Hb_009838_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.521896 0.578977 2.74463 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.155431 0 0

CAGE analysis