Hb_001431_100

Information

Type -
Description -
Location Contig1431: 120057-120407
Sequence    

Annotation

kegg
ID rcu:RCOM_0510070
description protein phosphatase 2c, putative (EC:3.1.3.16)
nr
ID XP_012081113.1
description PREDICTED: probable protein phosphatase 2C 27 [Jatropha curcas]
swissprot
ID Q5SMK6
description Probable protein phosphatase 2C 54 OS=Oryza sativa subsp. japonica GN=Os06g0179700 PE=2 SV=1
trembl
ID A0A067K1U0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16968 PE=3 SV=1
Gene Ontology
ID GO:0004722
description probable protein phosphatase 2c 27

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001431_100 0.0 - - PREDICTED: probable protein phosphatase 2C 27 [Jatropha curcas]
2 Hb_007100_010 0.1726152302 - - hypothetical protein ARALYDRAFT_479822 [Arabidopsis lyrata subsp. lyrata]
3 Hb_004308_020 0.1980983786 - - hypothetical protein POPTR_0005s15590g [Populus trichocarpa]
4 Hb_006469_110 0.2050173614 - - hypothetical protein JCGZ_12008 [Jatropha curcas]
5 Hb_008971_030 0.2065735818 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001976_070 0.2081935239 - - PREDICTED: uncharacterized protein LOC101497268 [Cicer arietinum]
7 Hb_064194_010 0.2102155537 - - PREDICTED: endoglucanase 6 [Jatropha curcas]
8 Hb_179367_020 0.2121236547 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
9 Hb_000908_030 0.2128121723 - - small heat-shock protein, putative [Ricinus communis]
10 Hb_132880_020 0.2169936139 - - hypothetical protein VITISV_026364 [Vitis vinifera]
11 Hb_157881_010 0.2173942274 - - ubiquitin-protein ligase, putative [Ricinus communis]
12 Hb_003878_130 0.2225015186 - - -
13 Hb_001152_040 0.2269720645 - - peripheral-type benzodiazepine receptor, putative [Ricinus communis]
14 Hb_004342_040 0.2279870064 - - PREDICTED: carotenoid 9,10(9',10')-cleavage dioxygenase 1-like [Jatropha curcas]
15 Hb_000009_100 0.2291612718 transcription factor TF Family: HB hypothetical protein JCGZ_12260 [Jatropha curcas]
16 Hb_135592_010 0.2308282033 - - conserved hypothetical protein [Ricinus communis]
17 Hb_007441_140 0.23185937 - - PREDICTED: cyclin-U4-1 [Jatropha curcas]
18 Hb_000163_040 0.2324100864 - - PREDICTED: indole-3-acetic acid-induced protein ARG2-like [Jatropha curcas]
19 Hb_177179_020 0.2328239191 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001006_080 0.2357359423 - - hypothetical protein JCGZ_04862 [Jatropha curcas]

Gene co-expression network

sample Hb_001431_100 Hb_001431_100 Hb_007100_010 Hb_007100_010 Hb_001431_100--Hb_007100_010 Hb_004308_020 Hb_004308_020 Hb_001431_100--Hb_004308_020 Hb_006469_110 Hb_006469_110 Hb_001431_100--Hb_006469_110 Hb_008971_030 Hb_008971_030 Hb_001431_100--Hb_008971_030 Hb_001976_070 Hb_001976_070 Hb_001431_100--Hb_001976_070 Hb_064194_010 Hb_064194_010 Hb_001431_100--Hb_064194_010 Hb_007441_140 Hb_007441_140 Hb_007100_010--Hb_007441_140 Hb_000190_160 Hb_000190_160 Hb_007100_010--Hb_000190_160 Hb_004112_080 Hb_004112_080 Hb_007100_010--Hb_004112_080 Hb_000635_020 Hb_000635_020 Hb_007100_010--Hb_000635_020 Hb_135592_010 Hb_135592_010 Hb_007100_010--Hb_135592_010 Hb_007290_040 Hb_007290_040 Hb_007100_010--Hb_007290_040 Hb_001810_040 Hb_001810_040 Hb_004308_020--Hb_001810_040 Hb_000352_240 Hb_000352_240 Hb_004308_020--Hb_000352_240 Hb_004308_020--Hb_006469_110 Hb_002309_030 Hb_002309_030 Hb_004308_020--Hb_002309_030 Hb_001369_500 Hb_001369_500 Hb_004308_020--Hb_001369_500 Hb_006469_110--Hb_002309_030 Hb_000347_520 Hb_000347_520 Hb_006469_110--Hb_000347_520 Hb_122079_010 Hb_122079_010 Hb_006469_110--Hb_122079_010 Hb_061335_010 Hb_061335_010 Hb_006469_110--Hb_061335_010 Hb_000053_150 Hb_000053_150 Hb_006469_110--Hb_000053_150 Hb_010812_080 Hb_010812_080 Hb_006469_110--Hb_010812_080 Hb_146902_010 Hb_146902_010 Hb_008971_030--Hb_146902_010 Hb_001541_220 Hb_001541_220 Hb_008971_030--Hb_001541_220 Hb_000111_440 Hb_000111_440 Hb_008971_030--Hb_000111_440 Hb_159327_010 Hb_159327_010 Hb_008971_030--Hb_159327_010 Hb_119808_020 Hb_119808_020 Hb_008971_030--Hb_119808_020 Hb_179367_020 Hb_179367_020 Hb_001976_070--Hb_179367_020 Hb_000908_030 Hb_000908_030 Hb_001976_070--Hb_000908_030 Hb_132880_020 Hb_132880_020 Hb_001976_070--Hb_132880_020 Hb_157881_010 Hb_157881_010 Hb_001976_070--Hb_157881_010 Hb_003878_130 Hb_003878_130 Hb_001976_070--Hb_003878_130 Hb_001152_040 Hb_001152_040 Hb_001976_070--Hb_001152_040 Hb_064194_010--Hb_001152_040 Hb_000009_100 Hb_000009_100 Hb_064194_010--Hb_000009_100 Hb_064194_010--Hb_132880_020 Hb_000700_020 Hb_000700_020 Hb_064194_010--Hb_000700_020 Hb_177179_020 Hb_177179_020 Hb_064194_010--Hb_177179_020 Hb_109304_010 Hb_109304_010 Hb_064194_010--Hb_109304_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.31419 1.48011 3.26357 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.259812 0.204183 0 0 0

CAGE analysis