Hb_000111_440

Information

Type -
Description -
Location Contig111: 396056-396978
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000111_440 0.0 - - -
2 Hb_008971_030 0.2046137773 - - conserved hypothetical protein [Ricinus communis]
3 Hb_007382_090 0.2196770633 - - protein binding protein, putative [Ricinus communis]
4 Hb_007432_010 0.2220675362 - - hypothetical protein B456_004G088300 [Gossypium raimondii]
5 Hb_003740_030 0.2367094926 transcription factor TF Family: RAV DNA-binding protein RAV1, putative [Ricinus communis]
6 Hb_005332_130 0.2520186723 - - Mavicyanin, putative [Ricinus communis]
7 Hb_051997_010 0.2542505108 - - -
8 Hb_000302_350 0.2614483362 - - polygalacturonase, putative [Ricinus communis]
9 Hb_146902_010 0.2642447579 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000866_100 0.2671305501 - - PREDICTED: protein PAIR1 isoform X2 [Jatropha curcas]
11 Hb_001226_010 0.2750053338 transcription factor TF Family: RWP-RK conserved hypothetical protein [Ricinus communis]
12 Hb_000284_280 0.2765593704 - - -
13 Hb_000740_020 0.2779259434 transcription factor TF Family: MYB-related asymmetric leaves1 and rough sheath, putative [Ricinus communis]
14 Hb_000111_400 0.2788782278 - - hypothetical protein POPTR_0003s19310g [Populus trichocarpa]
15 Hb_159327_010 0.2797512199 - - hypothetical protein JCGZ_23768 [Jatropha curcas]
16 Hb_000663_070 0.2809473429 - - cyclin A, putative [Ricinus communis]
17 Hb_000031_330 0.2822133825 transcription factor TF Family: Orphans hypothetical protein POPTR_0157s00200g, partial [Populus trichocarpa]
18 Hb_004112_060 0.2860318866 - - hypothetical protein POPTR_0017s01950g, partial [Populus trichocarpa]
19 Hb_000556_130 0.2892392617 - - PREDICTED: serine/threonine-protein kinase Aurora-3 [Jatropha curcas]
20 Hb_000108_060 0.3018063421 - - hypothetical protein POPTR_0010s07820g [Populus trichocarpa]

Gene co-expression network

sample Hb_000111_440 Hb_000111_440 Hb_008971_030 Hb_008971_030 Hb_000111_440--Hb_008971_030 Hb_007382_090 Hb_007382_090 Hb_000111_440--Hb_007382_090 Hb_007432_010 Hb_007432_010 Hb_000111_440--Hb_007432_010 Hb_003740_030 Hb_003740_030 Hb_000111_440--Hb_003740_030 Hb_005332_130 Hb_005332_130 Hb_000111_440--Hb_005332_130 Hb_051997_010 Hb_051997_010 Hb_000111_440--Hb_051997_010 Hb_146902_010 Hb_146902_010 Hb_008971_030--Hb_146902_010 Hb_001541_220 Hb_001541_220 Hb_008971_030--Hb_001541_220 Hb_001431_100 Hb_001431_100 Hb_008971_030--Hb_001431_100 Hb_159327_010 Hb_159327_010 Hb_008971_030--Hb_159327_010 Hb_119808_020 Hb_119808_020 Hb_008971_030--Hb_119808_020 Hb_007382_090--Hb_005332_130 Hb_007382_090--Hb_003740_030 Hb_000031_330 Hb_000031_330 Hb_007382_090--Hb_000031_330 Hb_003119_040 Hb_003119_040 Hb_007382_090--Hb_003119_040 Hb_005217_070 Hb_005217_070 Hb_007382_090--Hb_005217_070 Hb_000663_070 Hb_000663_070 Hb_007432_010--Hb_000663_070 Hb_007432_010--Hb_051997_010 Hb_000108_060 Hb_000108_060 Hb_007432_010--Hb_000108_060 Hb_004163_020 Hb_004163_020 Hb_007432_010--Hb_004163_020 Hb_003197_070 Hb_003197_070 Hb_007432_010--Hb_003197_070 Hb_000866_100 Hb_000866_100 Hb_003740_030--Hb_000866_100 Hb_001390_040 Hb_001390_040 Hb_003740_030--Hb_001390_040 Hb_007474_020 Hb_007474_020 Hb_003740_030--Hb_007474_020 Hb_034498_010 Hb_034498_010 Hb_003740_030--Hb_034498_010 Hb_000034_150 Hb_000034_150 Hb_003740_030--Hb_000034_150 Hb_000808_120 Hb_000808_120 Hb_005332_130--Hb_000808_120 Hb_001775_090 Hb_001775_090 Hb_005332_130--Hb_001775_090 Hb_000577_050 Hb_000577_050 Hb_005332_130--Hb_000577_050 Hb_007894_100 Hb_007894_100 Hb_005332_130--Hb_007894_100 Hb_005332_130--Hb_003119_040 Hb_000556_130 Hb_000556_130 Hb_051997_010--Hb_000556_130 Hb_051997_010--Hb_007382_090 Hb_007617_040 Hb_007617_040 Hb_051997_010--Hb_007617_040 Hb_051997_010--Hb_000663_070 Hb_002321_040 Hb_002321_040 Hb_051997_010--Hb_002321_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0456965 0.0776501 0.540675 0.489494 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.250477 0 0 0

CAGE analysis