Hb_000108_060

Information

Type -
Description -
Location Contig108: 49678-52223
Sequence    

Annotation

kegg
ID pop:POPTR_0010s07820g
description POPTRDRAFT_229862; hypothetical protein
nr
ID XP_002314496.2
description hypothetical protein POPTR_0010s07820g [Populus trichocarpa]
swissprot
ID P31049
description Probable fatty acid methyltransferase OS=Pseudomonas putida PE=3 SV=1
trembl
ID B9HSS3
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s07820g PE=4 SV=2
Gene Ontology
ID GO:0016740
description 2-heptaprenyl- -naphthoquinone

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02379: 50622-50940
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000108_060 0.0 - - hypothetical protein POPTR_0010s07820g [Populus trichocarpa]
2 Hb_003197_070 0.1383037379 - - PREDICTED: uncharacterized protein LOC104884990 [Beta vulgaris subsp. vulgaris]
3 Hb_000302_350 0.1837809369 - - polygalacturonase, putative [Ricinus communis]
4 Hb_007432_010 0.2656303029 - - hypothetical protein B456_004G088300 [Gossypium raimondii]
5 Hb_000111_440 0.3018063421 - - -
6 Hb_183671_010 0.3161897058 - - serine carboxypeptidase, putative [Ricinus communis]
7 Hb_002397_060 0.3277773933 - - conserved hypothetical protein [Ricinus communis]
8 Hb_051997_010 0.331449444 - - -
9 Hb_004785_050 0.3324547649 - - PREDICTED: serine decarboxylase [Jatropha curcas]
10 Hb_000035_280 0.3358315614 - - PREDICTED: pentatricopeptide repeat-containing protein At3g29230-like [Jatropha curcas]
11 Hb_006663_110 0.3362669168 - - PREDICTED: U-box domain-containing protein 34-like [Camelina sativa]
12 Hb_115832_010 0.3425293385 - - transcription factor, putative [Ricinus communis]
13 Hb_000236_170 0.3425703007 - - PREDICTED: Werner Syndrome-like exonuclease [Jatropha curcas]
14 Hb_146902_010 0.3451999663 - - conserved hypothetical protein [Ricinus communis]
15 Hb_005601_030 0.3494504752 - - organic anion transporter, putative [Ricinus communis]
16 Hb_001541_220 0.3564328222 transcription factor TF Family: ERF hypothetical protein RCOM_0793640 [Ricinus communis]
17 Hb_007210_020 0.3636008853 - - PREDICTED: hexaprenyldihydroxybenzoate methyltransferase, mitochondrial-like [Solanum tuberosum]
18 Hb_159327_010 0.3645443358 - - hypothetical protein JCGZ_23768 [Jatropha curcas]
19 Hb_001391_050 0.3681674384 - - PREDICTED: probable carboxylesterase 18 [Jatropha curcas]
20 Hb_000045_280 0.3682460601 - - hypothetical protein JCGZ_04076 [Jatropha curcas]

Gene co-expression network

sample Hb_000108_060 Hb_000108_060 Hb_003197_070 Hb_003197_070 Hb_000108_060--Hb_003197_070 Hb_000302_350 Hb_000302_350 Hb_000108_060--Hb_000302_350 Hb_007432_010 Hb_007432_010 Hb_000108_060--Hb_007432_010 Hb_000111_440 Hb_000111_440 Hb_000108_060--Hb_000111_440 Hb_183671_010 Hb_183671_010 Hb_000108_060--Hb_183671_010 Hb_002397_060 Hb_002397_060 Hb_000108_060--Hb_002397_060 Hb_003197_070--Hb_000302_350 Hb_003197_070--Hb_007432_010 Hb_003197_070--Hb_000111_440 Hb_000740_020 Hb_000740_020 Hb_003197_070--Hb_000740_020 Hb_001842_030 Hb_001842_030 Hb_003197_070--Hb_001842_030 Hb_146902_010 Hb_146902_010 Hb_000302_350--Hb_146902_010 Hb_001541_220 Hb_001541_220 Hb_000302_350--Hb_001541_220 Hb_000116_200 Hb_000116_200 Hb_000302_350--Hb_000116_200 Hb_000302_350--Hb_000111_440 Hb_007432_010--Hb_000111_440 Hb_000663_070 Hb_000663_070 Hb_007432_010--Hb_000663_070 Hb_051997_010 Hb_051997_010 Hb_007432_010--Hb_051997_010 Hb_004163_020 Hb_004163_020 Hb_007432_010--Hb_004163_020 Hb_008971_030 Hb_008971_030 Hb_000111_440--Hb_008971_030 Hb_007382_090 Hb_007382_090 Hb_000111_440--Hb_007382_090 Hb_003740_030 Hb_003740_030 Hb_000111_440--Hb_003740_030 Hb_005332_130 Hb_005332_130 Hb_000111_440--Hb_005332_130 Hb_000111_440--Hb_051997_010 Hb_115832_010 Hb_115832_010 Hb_183671_010--Hb_115832_010 Hb_006663_110 Hb_006663_110 Hb_183671_010--Hb_006663_110 Hb_005601_030 Hb_005601_030 Hb_183671_010--Hb_005601_030 Hb_019181_020 Hb_019181_020 Hb_183671_010--Hb_019181_020 Hb_001391_050 Hb_001391_050 Hb_183671_010--Hb_001391_050 Hb_120820_010 Hb_120820_010 Hb_183671_010--Hb_120820_010 Hb_009620_090 Hb_009620_090 Hb_002397_060--Hb_009620_090 Hb_005048_110 Hb_005048_110 Hb_002397_060--Hb_005048_110 Hb_004162_230 Hb_004162_230 Hb_002397_060--Hb_004162_230 Hb_001329_170 Hb_001329_170 Hb_002397_060--Hb_001329_170 Hb_000556_130 Hb_000556_130 Hb_002397_060--Hb_000556_130 Hb_000544_030 Hb_000544_030 Hb_002397_060--Hb_000544_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0656034 0 0.0757995 0.120417 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0594691 0 0 0

CAGE analysis