Hb_004162_230

Information

Type -
Description -
Location Contig4162: 199822-200256
Sequence    

Annotation

kegg
ID pmum:103326263
description probable histone H2B.1
nr
ID XP_012064675.1
description PREDICTED: histone H2B [Jatropha curcas]
swissprot
ID O49118
description Histone H2B OS=Capsicum annuum GN=HIS2B PE=2 SV=3
trembl
ID A0A067LH84
description Histone H2B OS=Jatropha curcas GN=JCGZ_05422 PE=3 SV=1
Gene Ontology
ID GO:0000786
description histone h2b

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 018_N01.ab1: 199676-200333 , 028_E17.ab1: 199668-200334 , 045_B24.ab1: 199676-200333

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004162_230 0.0 - - PREDICTED: histone H2B [Jatropha curcas]
2 Hb_002411_060 0.1609866252 - - PREDICTED: 65-kDa microtubule-associated protein 5 [Jatropha curcas]
3 Hb_157022_030 0.1627976611 transcription factor TF Family: NF-YB ccaat-binding transcription factor subunit A, putative [Ricinus communis]
4 Hb_002307_020 0.1746324875 - - PREDICTED: histone H1-like [Jatropha curcas]
5 Hb_036790_030 0.1792623595 - - PREDICTED: UPF0544 protein C5orf45 homolog [Jatropha curcas]
6 Hb_000739_270 0.1824435547 - - PREDICTED: serine/threonine-protein kinase Aurora-3 [Jatropha curcas]
7 Hb_010998_050 0.1825173826 - - PREDICTED: kinesin-like protein KIF22 isoform X2 [Jatropha curcas]
8 Hb_000684_120 0.1848780437 - - PREDICTED: uncharacterized protein LOC105642190 isoform X2 [Jatropha curcas]
9 Hb_001329_190 0.1908690124 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
10 Hb_010488_040 0.1944519394 - - PREDICTED: phosphomannomutase [Populus euphratica]
11 Hb_004449_040 0.1971153031 - - PREDICTED: uncharacterized protein C630.12 [Jatropha curcas]
12 Hb_025214_120 0.198513075 - - PREDICTED: glucan endo-1,3-beta-glucosidase 13 [Jatropha curcas]
13 Hb_006275_060 0.1990863651 - - hypothetical protein CARUB_v10021660mg, partial [Capsella rubella]
14 Hb_006970_140 0.1996294515 - - PREDICTED: histone H3.2-like [Solanum lycopersicum]
15 Hb_002235_380 0.2002298954 - - hypothetical protein JCGZ_19860 [Jatropha curcas]
16 Hb_030627_070 0.2020961658 - - histone H4 [Zea mays]
17 Hb_001454_070 0.2061487748 - - Uveal autoantigen with coiled-coil domains and ankyrin repeats isoform 1 [Theobroma cacao]
18 Hb_004116_120 0.2069067677 - - PREDICTED: protein EARLY FLOWERING 4 [Jatropha curcas]
19 Hb_001016_010 0.2078143983 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000139_490 0.2081191451 - - PREDICTED: transcription factor MUTE [Jatropha curcas]

Gene co-expression network

sample Hb_004162_230 Hb_004162_230 Hb_002411_060 Hb_002411_060 Hb_004162_230--Hb_002411_060 Hb_157022_030 Hb_157022_030 Hb_004162_230--Hb_157022_030 Hb_002307_020 Hb_002307_020 Hb_004162_230--Hb_002307_020 Hb_036790_030 Hb_036790_030 Hb_004162_230--Hb_036790_030 Hb_000739_270 Hb_000739_270 Hb_004162_230--Hb_000739_270 Hb_010998_050 Hb_010998_050 Hb_004162_230--Hb_010998_050 Hb_000684_120 Hb_000684_120 Hb_002411_060--Hb_000684_120 Hb_004449_040 Hb_004449_040 Hb_002411_060--Hb_004449_040 Hb_000345_260 Hb_000345_260 Hb_002411_060--Hb_000345_260 Hb_002837_050 Hb_002837_050 Hb_002411_060--Hb_002837_050 Hb_004117_190 Hb_004117_190 Hb_002411_060--Hb_004117_190 Hb_000139_490 Hb_000139_490 Hb_157022_030--Hb_000139_490 Hb_001329_190 Hb_001329_190 Hb_157022_030--Hb_001329_190 Hb_000556_130 Hb_000556_130 Hb_157022_030--Hb_000556_130 Hb_000663_070 Hb_000663_070 Hb_157022_030--Hb_000663_070 Hb_157022_030--Hb_004449_040 Hb_006275_060 Hb_006275_060 Hb_002307_020--Hb_006275_060 Hb_002007_040 Hb_002007_040 Hb_002307_020--Hb_002007_040 Hb_000051_080 Hb_000051_080 Hb_002307_020--Hb_000051_080 Hb_003784_040 Hb_003784_040 Hb_002307_020--Hb_003784_040 Hb_000155_150 Hb_000155_150 Hb_002307_020--Hb_000155_150 Hb_001780_080 Hb_001780_080 Hb_002307_020--Hb_001780_080 Hb_036790_030--Hb_010998_050 Hb_000345_130 Hb_000345_130 Hb_036790_030--Hb_000345_130 Hb_036790_030--Hb_002307_020 Hb_036790_030--Hb_000739_270 Hb_036790_030--Hb_002007_040 Hb_000349_230 Hb_000349_230 Hb_036790_030--Hb_000349_230 Hb_008994_010 Hb_008994_010 Hb_000739_270--Hb_008994_010 Hb_000739_270--Hb_000345_130 Hb_008406_100 Hb_008406_100 Hb_000739_270--Hb_008406_100 Hb_000739_270--Hb_010998_050 Hb_000345_410 Hb_000345_410 Hb_010998_050--Hb_000345_410 Hb_002007_280 Hb_002007_280 Hb_010998_050--Hb_002007_280 Hb_010998_050--Hb_000349_230 Hb_010998_050--Hb_000345_130 Hb_005162_130 Hb_005162_130 Hb_010998_050--Hb_005162_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
23.3724 13.5981 218.682 105.882 6.85729 22.9484
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
57.1175 48.3453 2.41544 13.5229 7.49098

CAGE analysis