Hb_157022_030

Information

Type transcription factor
Description TF Family: NF-YB
Location Contig157022: 19381-20040
Sequence    

Annotation

kegg
ID rcu:RCOM_0521850
description ccaat-binding transcription factor subunit A, putative
nr
ID XP_002522740.1
description ccaat-binding transcription factor subunit A, putative [Ricinus communis]
swissprot
ID Q9SFD8
description Nuclear transcription factor Y subunit B-9 OS=Arabidopsis thaliana GN=NFYB9 PE=1 SV=2
trembl
ID B9S9S1
description Ccaat-binding transcription factor subunit A, putative OS=Ricinus communis GN=RCOM_0521850 PE=4 SV=1
Gene Ontology
ID GO:0005634
description ccaat-binding transcription factor subunit

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_157022_030 0.0 transcription factor TF Family: NF-YB ccaat-binding transcription factor subunit A, putative [Ricinus communis]
2 Hb_004162_230 0.1627976611 - - PREDICTED: histone H2B [Jatropha curcas]
3 Hb_000139_490 0.1723691185 - - PREDICTED: transcription factor MUTE [Jatropha curcas]
4 Hb_001329_190 0.1980832936 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
5 Hb_000556_130 0.2091972928 - - PREDICTED: serine/threonine-protein kinase Aurora-3 [Jatropha curcas]
6 Hb_000663_070 0.2234761194 - - cyclin A, putative [Ricinus communis]
7 Hb_004449_040 0.2264698414 - - PREDICTED: uncharacterized protein C630.12 [Jatropha curcas]
8 Hb_004116_120 0.2315874151 - - PREDICTED: protein EARLY FLOWERING 4 [Jatropha curcas]
9 Hb_002411_060 0.2322412165 - - PREDICTED: 65-kDa microtubule-associated protein 5 [Jatropha curcas]
10 Hb_010436_080 0.235143716 - - PREDICTED: DNA replication licensing factor MCM5 [Jatropha curcas]
11 Hb_000739_270 0.2376944353 - - PREDICTED: serine/threonine-protein kinase Aurora-3 [Jatropha curcas]
12 Hb_000155_150 0.2378777496 - - hypothetical protein CARUB_v10021660mg, partial [Capsella rubella]
13 Hb_003078_060 0.238149452 - - 60S ribosomal protein L32, putative [Ricinus communis]
14 Hb_002235_380 0.2399262089 - - hypothetical protein JCGZ_19860 [Jatropha curcas]
15 Hb_002307_020 0.240245332 - - PREDICTED: histone H1-like [Jatropha curcas]
16 Hb_001329_010 0.246308597 - - zinc finger protein, putative [Ricinus communis]
17 Hb_000926_230 0.2466234579 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000656_320 0.2559658203 - - PREDICTED: guanine nucleotide-binding protein subunit gamma 3-like [Jatropha curcas]
19 Hb_006275_060 0.2570846997 - - hypothetical protein CARUB_v10021660mg, partial [Capsella rubella]
20 Hb_005332_130 0.2611676695 - - Mavicyanin, putative [Ricinus communis]

Gene co-expression network

sample Hb_157022_030 Hb_157022_030 Hb_004162_230 Hb_004162_230 Hb_157022_030--Hb_004162_230 Hb_000139_490 Hb_000139_490 Hb_157022_030--Hb_000139_490 Hb_001329_190 Hb_001329_190 Hb_157022_030--Hb_001329_190 Hb_000556_130 Hb_000556_130 Hb_157022_030--Hb_000556_130 Hb_000663_070 Hb_000663_070 Hb_157022_030--Hb_000663_070 Hb_004449_040 Hb_004449_040 Hb_157022_030--Hb_004449_040 Hb_002411_060 Hb_002411_060 Hb_004162_230--Hb_002411_060 Hb_002307_020 Hb_002307_020 Hb_004162_230--Hb_002307_020 Hb_036790_030 Hb_036790_030 Hb_004162_230--Hb_036790_030 Hb_000739_270 Hb_000739_270 Hb_004162_230--Hb_000739_270 Hb_010998_050 Hb_010998_050 Hb_004162_230--Hb_010998_050 Hb_000926_230 Hb_000926_230 Hb_000139_490--Hb_000926_230 Hb_000139_490--Hb_004162_230 Hb_000139_490--Hb_002411_060 Hb_003078_060 Hb_003078_060 Hb_000139_490--Hb_003078_060 Hb_000029_100 Hb_000029_100 Hb_000139_490--Hb_000029_100 Hb_001329_190--Hb_004162_230 Hb_001329_190--Hb_000739_270 Hb_010488_040 Hb_010488_040 Hb_001329_190--Hb_010488_040 Hb_011609_040 Hb_011609_040 Hb_001329_190--Hb_011609_040 Hb_013834_010 Hb_013834_010 Hb_001329_190--Hb_013834_010 Hb_001329_010 Hb_001329_010 Hb_000556_130--Hb_001329_010 Hb_007617_040 Hb_007617_040 Hb_000556_130--Hb_007617_040 Hb_004619_090 Hb_004619_090 Hb_000556_130--Hb_004619_090 Hb_003813_110 Hb_003813_110 Hb_000556_130--Hb_003813_110 Hb_000556_130--Hb_000663_070 Hb_000656_320 Hb_000656_320 Hb_000556_130--Hb_000656_320 Hb_000034_150 Hb_000034_150 Hb_000663_070--Hb_000034_150 Hb_000172_090 Hb_000172_090 Hb_000663_070--Hb_000172_090 Hb_006570_040 Hb_006570_040 Hb_000663_070--Hb_006570_040 Hb_000028_240 Hb_000028_240 Hb_000663_070--Hb_000028_240 Hb_001780_080 Hb_001780_080 Hb_000663_070--Hb_001780_080 Hb_000684_120 Hb_000684_120 Hb_004449_040--Hb_000684_120 Hb_000563_440 Hb_000563_440 Hb_004449_040--Hb_000563_440 Hb_001114_170 Hb_001114_170 Hb_004449_040--Hb_001114_170 Hb_005271_140 Hb_005271_140 Hb_004449_040--Hb_005271_140 Hb_101146_010 Hb_101146_010 Hb_004449_040--Hb_101146_010 Hb_004449_040--Hb_002411_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0480165 0.0962198 0.966417 0.608869 0 0.10125
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.175789 0.207271 0 0.0845636 0

CAGE analysis