Hb_006570_040

Information

Type -
Description -
Location Contig6570: 16801-17040
Sequence    

Annotation

kegg
ID cic:CICLE_v10002683mg
description hypothetical protein
nr
ID XP_006435191.1
description hypothetical protein CICLE_v10002683mg [Citrus clementina]
swissprot
ID Q9FYB5
description Chaperone protein dnaJ 11, chloroplastic OS=Arabidopsis thaliana GN=ATJ11 PE=1 SV=2
trembl
ID V4TFG7
description Uncharacterized protein OS=Citrus clementina GN=CICLE_v10002683mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006570_040 0.0 - - hypothetical protein CICLE_v10002683mg [Citrus clementina]
2 Hb_005946_020 0.1384956913 - - Pleiotropic drug resistance protein 4 [Triticum urartu]
3 Hb_000028_240 0.1612987533 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000139_280 0.1684351133 - - PREDICTED: mitogen-activated protein kinase kinase kinase NPK1 isoform X1 [Jatropha curcas]
5 Hb_000190_220 0.1794586587 - - PREDICTED: serine/threonine-protein kinase Nek2 [Jatropha curcas]
6 Hb_000260_040 0.1806825739 - - PREDICTED: uncharacterized protein LOC105649093 [Jatropha curcas]
7 Hb_000956_050 0.1811359221 transcription factor TF Family: bHLH PREDICTED: transcription factor SPATULA-like isoform X1 [Jatropha curcas]
8 Hb_003401_010 0.1834187327 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1 [Jatropha curcas]
9 Hb_000663_070 0.1860387887 - - cyclin A, putative [Ricinus communis]
10 Hb_000172_090 0.1869547026 - - PREDICTED: uncharacterized protein LOC105650755 [Jatropha curcas]
11 Hb_002979_030 0.1881434033 - - PREDICTED: serine/threonine-protein kinase Aurora-1 isoform X2 [Jatropha curcas]
12 Hb_003540_020 0.1949599723 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001250_130 0.1950710624 - - hypothetical protein POPTR_0008s19280g [Populus trichocarpa]
14 Hb_000028_250 0.1967182201 - - PREDICTED: nudix hydrolase 4 [Jatropha curcas]
15 Hb_014497_070 0.2001193843 - - PREDICTED: cyclin-dependent kinase B2-2 [Jatropha curcas]
16 Hb_000500_340 0.2042590118 - - PREDICTED: exonuclease 1 [Jatropha curcas]
17 Hb_000964_050 0.2044147998 - - PREDICTED: uncharacterized protein LOC105628694 [Jatropha curcas]
18 Hb_033594_040 0.2045833462 - - PREDICTED: heptahelical transmembrane protein 4-like isoform X2 [Jatropha curcas]
19 Hb_003228_050 0.2046378144 - - chromomethylase [Hevea brasiliensis]
20 Hb_000567_290 0.2060018109 - - hypothetical protein RCOM_0303940 [Ricinus communis]

Gene co-expression network

sample Hb_006570_040 Hb_006570_040 Hb_005946_020 Hb_005946_020 Hb_006570_040--Hb_005946_020 Hb_000028_240 Hb_000028_240 Hb_006570_040--Hb_000028_240 Hb_000139_280 Hb_000139_280 Hb_006570_040--Hb_000139_280 Hb_000190_220 Hb_000190_220 Hb_006570_040--Hb_000190_220 Hb_000260_040 Hb_000260_040 Hb_006570_040--Hb_000260_040 Hb_000956_050 Hb_000956_050 Hb_006570_040--Hb_000956_050 Hb_005946_020--Hb_000956_050 Hb_031266_030 Hb_031266_030 Hb_005946_020--Hb_031266_030 Hb_000028_250 Hb_000028_250 Hb_005946_020--Hb_000028_250 Hb_005946_020--Hb_000028_240 Hb_005946_020--Hb_000190_220 Hb_002979_030 Hb_002979_030 Hb_000028_240--Hb_002979_030 Hb_000028_240--Hb_000028_250 Hb_005162_120 Hb_005162_120 Hb_000028_240--Hb_005162_120 Hb_000441_210 Hb_000441_210 Hb_000028_240--Hb_000441_210 Hb_002205_180 Hb_002205_180 Hb_000028_240--Hb_002205_180 Hb_003784_040 Hb_003784_040 Hb_000139_280--Hb_003784_040 Hb_005504_040 Hb_005504_040 Hb_000139_280--Hb_005504_040 Hb_000139_280--Hb_000190_220 Hb_001780_080 Hb_001780_080 Hb_000139_280--Hb_001780_080 Hb_000139_280--Hb_000260_040 Hb_006275_060 Hb_006275_060 Hb_000139_280--Hb_006275_060 Hb_000190_220--Hb_000956_050 Hb_002311_090 Hb_002311_090 Hb_000190_220--Hb_002311_090 Hb_010436_080 Hb_010436_080 Hb_000190_220--Hb_010436_080 Hb_007943_180 Hb_007943_180 Hb_000190_220--Hb_007943_180 Hb_006970_130 Hb_006970_130 Hb_000190_220--Hb_006970_130 Hb_000260_040--Hb_005504_040 Hb_004650_030 Hb_004650_030 Hb_000260_040--Hb_004650_030 Hb_001401_040 Hb_001401_040 Hb_000260_040--Hb_001401_040 Hb_000260_040--Hb_003784_040 Hb_000172_090 Hb_000172_090 Hb_000260_040--Hb_000172_090 Hb_003228_050 Hb_003228_050 Hb_000956_050--Hb_003228_050 Hb_003813_090 Hb_003813_090 Hb_000956_050--Hb_003813_090 Hb_024714_090 Hb_024714_090 Hb_000956_050--Hb_024714_090 Hb_000907_140 Hb_000907_140 Hb_000956_050--Hb_000907_140 Hb_000956_050--Hb_002311_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.655214 3.95582 104.83 54.4695 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.30254 15.9394 1.40708 2.40903 14.9942

CAGE analysis