Hb_000926_230

Information

Type -
Description -
Location Contig926: 253271-257595
Sequence    

Annotation

kegg
ID rcu:RCOM_0752620
description hypothetical protein
nr
ID XP_002529462.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q564K3
description Condensin complex subunit 2 OS=Arabidopsis thaliana GN=CAPH PE=1 SV=1
trembl
ID B9STZ3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0752620 PE=4 SV=1
Gene Ontology
ID GO:0000796
description condensin complex subunit 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62685: 253450-258084 , PASA_asmbl_62686: 257293-257826
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000926_230 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000139_490 0.1729643024 - - PREDICTED: transcription factor MUTE [Jatropha curcas]
3 Hb_009620_090 0.1812177372 - - hypothetical protein L484_000980 [Morus notabilis]
4 Hb_001005_160 0.1823672393 - - conserved hypothetical protein [Ricinus communis]
5 Hb_089140_120 0.1874398217 - - PREDICTED: MOB kinase activator-like 1 [Jatropha curcas]
6 Hb_001545_050 0.1877649957 - - PREDICTED: ras-related protein Rab7 [Nicotiana sylvestris]
7 Hb_074836_010 0.1977419473 - - conserved hypothetical protein [Ricinus communis]
8 Hb_010488_040 0.1989326927 - - PREDICTED: phosphomannomutase [Populus euphratica]
9 Hb_006907_100 0.2058899365 - - PREDICTED: tropinone reductase-like 3 [Jatropha curcas]
10 Hb_010789_020 0.2116724976 - - ubiquitin-conjugating enzyme e2S, putative [Ricinus communis]
11 Hb_000438_090 0.2122918592 - - PREDICTED: mini-chromosome maintenance complex-binding protein [Jatropha curcas]
12 Hb_000028_060 0.2124734636 - - -
13 Hb_011485_090 0.2127728566 - - -
14 Hb_000029_100 0.2142879659 - - PREDICTED: nicalin-1-like isoform X2 [Populus euphratica]
15 Hb_001454_070 0.2211439371 - - Uveal autoantigen with coiled-coil domains and ankyrin repeats isoform 1 [Theobroma cacao]
16 Hb_000742_190 0.2252042743 - - PREDICTED: histidinol dehydrogenase, chloroplastic isoform X1 [Jatropha curcas]
17 Hb_000580_100 0.2273123735 - - PREDICTED: uncharacterized protein LOC105643133 isoform X1 [Jatropha curcas]
18 Hb_001329_190 0.2304021299 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
19 Hb_000302_130 0.2339730689 - - PREDICTED: trafficking protein particle complex subunit 1 [Jatropha curcas]
20 Hb_128473_010 0.2354138644 - - -

Gene co-expression network

sample Hb_000926_230 Hb_000926_230 Hb_000139_490 Hb_000139_490 Hb_000926_230--Hb_000139_490 Hb_009620_090 Hb_009620_090 Hb_000926_230--Hb_009620_090 Hb_001005_160 Hb_001005_160 Hb_000926_230--Hb_001005_160 Hb_089140_120 Hb_089140_120 Hb_000926_230--Hb_089140_120 Hb_001545_050 Hb_001545_050 Hb_000926_230--Hb_001545_050 Hb_074836_010 Hb_074836_010 Hb_000926_230--Hb_074836_010 Hb_157022_030 Hb_157022_030 Hb_000139_490--Hb_157022_030 Hb_004162_230 Hb_004162_230 Hb_000139_490--Hb_004162_230 Hb_002411_060 Hb_002411_060 Hb_000139_490--Hb_002411_060 Hb_003078_060 Hb_003078_060 Hb_000139_490--Hb_003078_060 Hb_000029_100 Hb_000029_100 Hb_000139_490--Hb_000029_100 Hb_002397_060 Hb_002397_060 Hb_009620_090--Hb_002397_060 Hb_010488_040 Hb_010488_040 Hb_009620_090--Hb_010488_040 Hb_009620_090--Hb_074836_010 Hb_000174_050 Hb_000174_050 Hb_009620_090--Hb_000174_050 Hb_000544_030 Hb_000544_030 Hb_009620_090--Hb_000544_030 Hb_007894_210 Hb_007894_210 Hb_001005_160--Hb_007894_210 Hb_001005_160--Hb_010488_040 Hb_000438_090 Hb_000438_090 Hb_001005_160--Hb_000438_090 Hb_001005_160--Hb_001545_050 Hb_002411_080 Hb_002411_080 Hb_001005_160--Hb_002411_080 Hb_010789_020 Hb_010789_020 Hb_089140_120--Hb_010789_020 Hb_089140_120--Hb_000438_090 Hb_001486_020 Hb_001486_020 Hb_089140_120--Hb_001486_020 Hb_000743_030 Hb_000743_030 Hb_089140_120--Hb_000743_030 Hb_001911_040 Hb_001911_040 Hb_089140_120--Hb_001911_040 Hb_010053_040 Hb_010053_040 Hb_089140_120--Hb_010053_040 Hb_000028_060 Hb_000028_060 Hb_001545_050--Hb_000028_060 Hb_007123_060 Hb_007123_060 Hb_001545_050--Hb_007123_060 Hb_003925_070 Hb_003925_070 Hb_001545_050--Hb_003925_070 Hb_153258_050 Hb_153258_050 Hb_001545_050--Hb_153258_050 Hb_001902_130 Hb_001902_130 Hb_001545_050--Hb_001902_130 Hb_004883_050 Hb_004883_050 Hb_001545_050--Hb_004883_050 Hb_155541_010 Hb_155541_010 Hb_074836_010--Hb_155541_010 Hb_164255_010 Hb_164255_010 Hb_074836_010--Hb_164255_010 Hb_074836_010--Hb_001545_050 Hb_118228_010 Hb_118228_010 Hb_074836_010--Hb_118228_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0835764 0.0724132 0.241173 0.26796 0.0314221 0.0910455
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0765606 0.150565 0 0.0482094 0

CAGE analysis