Hb_002397_060

Information

Type -
Description -
Location Contig2397: 72780-73538
Sequence    

Annotation

kegg
ID rcu:RCOM_1619640
description hypothetical protein
nr
ID XP_002512032.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RE93
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1619640 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25096: 73337-73503
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002397_060 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_009620_090 0.1860363523 - - hypothetical protein L484_000980 [Morus notabilis]
3 Hb_005048_110 0.2197061517 - - -
4 Hb_004162_230 0.2653344941 - - PREDICTED: histone H2B [Jatropha curcas]
5 Hb_001329_170 0.2707245554 - - Chlorophyll a-b binding protein, chloroplastic [Aegilops tauschii]
6 Hb_000556_130 0.2761403346 - - PREDICTED: serine/threonine-protein kinase Aurora-3 [Jatropha curcas]
7 Hb_000544_030 0.2767047691 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001329_190 0.2772517684 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
9 Hb_000926_230 0.2843975506 - - conserved hypothetical protein [Ricinus communis]
10 Hb_025214_120 0.2911362578 - - PREDICTED: glucan endo-1,3-beta-glucosidase 13 [Jatropha curcas]
11 Hb_000174_050 0.2934325971 - - PREDICTED: gamma-tubulin complex component 2 [Populus euphratica]
12 Hb_010488_040 0.2962432818 - - PREDICTED: phosphomannomutase [Populus euphratica]
13 Hb_000139_490 0.2983598757 - - PREDICTED: transcription factor MUTE [Jatropha curcas]
14 Hb_008994_010 0.2993558848 - - Pectin lyase-like superfamily protein isoform 1 [Theobroma cacao]
15 Hb_001195_180 0.2995708812 transcription factor TF Family: zf-HD PREDICTED: zinc-finger homeodomain protein 5 [Jatropha curcas]
16 Hb_114310_120 0.3008867496 - - PREDICTED: 50S ribosomal protein L31, chloroplastic [Eucalyptus grandis]
17 Hb_074836_010 0.3009380067 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000739_270 0.302437953 - - PREDICTED: serine/threonine-protein kinase Aurora-3 [Jatropha curcas]
19 Hb_051997_010 0.3045272021 - - -
20 Hb_002627_070 0.3064739329 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002397_060 Hb_002397_060 Hb_009620_090 Hb_009620_090 Hb_002397_060--Hb_009620_090 Hb_005048_110 Hb_005048_110 Hb_002397_060--Hb_005048_110 Hb_004162_230 Hb_004162_230 Hb_002397_060--Hb_004162_230 Hb_001329_170 Hb_001329_170 Hb_002397_060--Hb_001329_170 Hb_000556_130 Hb_000556_130 Hb_002397_060--Hb_000556_130 Hb_000544_030 Hb_000544_030 Hb_002397_060--Hb_000544_030 Hb_000926_230 Hb_000926_230 Hb_009620_090--Hb_000926_230 Hb_010488_040 Hb_010488_040 Hb_009620_090--Hb_010488_040 Hb_074836_010 Hb_074836_010 Hb_009620_090--Hb_074836_010 Hb_000174_050 Hb_000174_050 Hb_009620_090--Hb_000174_050 Hb_009620_090--Hb_000544_030 Hb_126648_010 Hb_126648_010 Hb_005048_110--Hb_126648_010 Hb_002321_040 Hb_002321_040 Hb_005048_110--Hb_002321_040 Hb_011609_040 Hb_011609_040 Hb_005048_110--Hb_011609_040 Hb_005048_110--Hb_001329_170 Hb_001329_190 Hb_001329_190 Hb_005048_110--Hb_001329_190 Hb_002411_060 Hb_002411_060 Hb_004162_230--Hb_002411_060 Hb_157022_030 Hb_157022_030 Hb_004162_230--Hb_157022_030 Hb_002307_020 Hb_002307_020 Hb_004162_230--Hb_002307_020 Hb_036790_030 Hb_036790_030 Hb_004162_230--Hb_036790_030 Hb_000739_270 Hb_000739_270 Hb_004162_230--Hb_000739_270 Hb_010998_050 Hb_010998_050 Hb_004162_230--Hb_010998_050 Hb_001329_170--Hb_002321_040 Hb_000111_400 Hb_000111_400 Hb_001329_170--Hb_000111_400 Hb_001329_170--Hb_009620_090 Hb_001329_170--Hb_126648_010 Hb_001329_010 Hb_001329_010 Hb_000556_130--Hb_001329_010 Hb_007617_040 Hb_007617_040 Hb_000556_130--Hb_007617_040 Hb_004619_090 Hb_004619_090 Hb_000556_130--Hb_004619_090 Hb_003813_110 Hb_003813_110 Hb_000556_130--Hb_003813_110 Hb_000663_070 Hb_000663_070 Hb_000556_130--Hb_000663_070 Hb_000656_320 Hb_000656_320 Hb_000556_130--Hb_000656_320 Hb_000948_200 Hb_000948_200 Hb_000544_030--Hb_000948_200 Hb_003669_010 Hb_003669_010 Hb_000544_030--Hb_003669_010 Hb_002960_150 Hb_002960_150 Hb_000544_030--Hb_002960_150 Hb_004093_020 Hb_004093_020 Hb_000544_030--Hb_004093_020 Hb_008566_040 Hb_008566_040 Hb_000544_030--Hb_008566_040 Hb_000544_030--Hb_010488_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.326054 0 0.901101 0.727654 0.12723 0.117598
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.153319 0.240866 0 0 0

CAGE analysis