Hb_000556_130

Information

Type -
Description -
Location Contig556: 142488-144442
Sequence    

Annotation

kegg
ID tcc:TCM_005482
description Ataurora3
nr
ID XP_012083545.1
description PREDICTED: serine/threonine-protein kinase Aurora-3 [Jatropha curcas]
swissprot
ID O64629
description Serine/threonine-protein kinase Aurora-3 OS=Arabidopsis thaliana GN=AUR3 PE=2 SV=1
trembl
ID A0A067JY03
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14503 PE=4 SV=1
Gene Ontology
ID GO:0005819
description serine threonine-protein kinase aurora-3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48516: 142836-144659
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000556_130 0.0 - - PREDICTED: serine/threonine-protein kinase Aurora-3 [Jatropha curcas]
2 Hb_001329_010 0.143556189 - - zinc finger protein, putative [Ricinus communis]
3 Hb_007617_040 0.174012557 - - PREDICTED: syntaxin-112-like [Jatropha curcas]
4 Hb_004619_090 0.1808185468 - - conserved hypothetical protein [Ricinus communis]
5 Hb_003813_110 0.1867399902 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000663_070 0.188284506 - - cyclin A, putative [Ricinus communis]
7 Hb_000656_320 0.1926752255 - - PREDICTED: guanine nucleotide-binding protein subunit gamma 3-like [Jatropha curcas]
8 Hb_000441_210 0.2047245524 - - PREDICTED: uncharacterized protein LOC105636842 [Jatropha curcas]
9 Hb_157022_030 0.2091972928 transcription factor TF Family: NF-YB ccaat-binding transcription factor subunit A, putative [Ricinus communis]
10 Hb_000866_100 0.2106070837 - - PREDICTED: protein PAIR1 isoform X2 [Jatropha curcas]
11 Hb_000034_150 0.212007426 - - PREDICTED: kinesin-like protein BC2 [Jatropha curcas]
12 Hb_000567_290 0.2228693289 - - hypothetical protein RCOM_0303940 [Ricinus communis]
13 Hb_013344_010 0.2246310827 - - PREDICTED: microtubule-associated protein TORTIFOLIA1 [Jatropha curcas]
14 Hb_000936_030 0.2250322795 - - hypothetical protein RCOM_0615680 [Ricinus communis]
15 Hb_001410_030 0.2271807642 - - hypothetical protein JCGZ_20419 [Jatropha curcas]
16 Hb_003740_030 0.2277684645 transcription factor TF Family: RAV DNA-binding protein RAV1, putative [Ricinus communis]
17 Hb_051997_010 0.2294636705 - - -
18 Hb_002205_180 0.2296498647 - - PREDICTED: uncharacterized protein LOC105649178 [Jatropha curcas]
19 Hb_072201_010 0.2303891021 - - PREDICTED: cell division control protein 2 homolog C [Jatropha curcas]
20 Hb_014497_070 0.2310990489 - - PREDICTED: cyclin-dependent kinase B2-2 [Jatropha curcas]

Gene co-expression network

sample Hb_000556_130 Hb_000556_130 Hb_001329_010 Hb_001329_010 Hb_000556_130--Hb_001329_010 Hb_007617_040 Hb_007617_040 Hb_000556_130--Hb_007617_040 Hb_004619_090 Hb_004619_090 Hb_000556_130--Hb_004619_090 Hb_003813_110 Hb_003813_110 Hb_000556_130--Hb_003813_110 Hb_000663_070 Hb_000663_070 Hb_000556_130--Hb_000663_070 Hb_000656_320 Hb_000656_320 Hb_000556_130--Hb_000656_320 Hb_001329_010--Hb_000656_320 Hb_013344_010 Hb_013344_010 Hb_001329_010--Hb_013344_010 Hb_001329_010--Hb_003813_110 Hb_002942_170 Hb_002942_170 Hb_001329_010--Hb_002942_170 Hb_072201_010 Hb_072201_010 Hb_001329_010--Hb_072201_010 Hb_012016_050 Hb_012016_050 Hb_007617_040--Hb_012016_050 Hb_128392_010 Hb_128392_010 Hb_007617_040--Hb_128392_010 Hb_021576_050 Hb_021576_050 Hb_007617_040--Hb_021576_050 Hb_007617_040--Hb_003813_110 Hb_001247_060 Hb_001247_060 Hb_007617_040--Hb_001247_060 Hb_000418_040 Hb_000418_040 Hb_004619_090--Hb_000418_040 Hb_004619_090--Hb_003813_110 Hb_000441_210 Hb_000441_210 Hb_004619_090--Hb_000441_210 Hb_118282_020 Hb_118282_020 Hb_004619_090--Hb_118282_020 Hb_101133_050 Hb_101133_050 Hb_004619_090--Hb_101133_050 Hb_001390_040 Hb_001390_040 Hb_004619_090--Hb_001390_040 Hb_000567_290 Hb_000567_290 Hb_003813_110--Hb_000567_290 Hb_000661_150 Hb_000661_150 Hb_003813_110--Hb_000661_150 Hb_003813_110--Hb_000441_210 Hb_002311_090 Hb_002311_090 Hb_003813_110--Hb_002311_090 Hb_003813_110--Hb_000418_040 Hb_000034_150 Hb_000034_150 Hb_000663_070--Hb_000034_150 Hb_000172_090 Hb_000172_090 Hb_000663_070--Hb_000172_090 Hb_006570_040 Hb_006570_040 Hb_000663_070--Hb_006570_040 Hb_000028_240 Hb_000028_240 Hb_000663_070--Hb_000028_240 Hb_001780_080 Hb_001780_080 Hb_000663_070--Hb_001780_080 Hb_006060_010 Hb_006060_010 Hb_000656_320--Hb_006060_010 Hb_000936_030 Hb_000936_030 Hb_000656_320--Hb_000936_030 Hb_000656_320--Hb_013344_010 Hb_000577_050 Hb_000577_050 Hb_000656_320--Hb_000577_050 Hb_014497_070 Hb_014497_070 Hb_000656_320--Hb_014497_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.361352 0.11447 8.15736 5.24839 0.220445 0.284464
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.348802 0.868618 0 0.295003 0

CAGE analysis