Hb_000034_150

Information

Type -
Description -
Location Contig34: 285775-309143
Sequence    

Annotation

kegg
ID rcu:RCOM_1039560
description Chromosome-associated kinesin KIF4A, putative
nr
ID XP_012068015.1
description PREDICTED: kinesin-like protein BC2 [Jatropha curcas]
swissprot
ID Q8GS71
description Kinesin-like protein FRA1 OS=Arabidopsis thaliana GN=FRA1 PE=1 SV=1
trembl
ID A0A067KZ46
description Kinesin-like protein OS=Jatropha curcas GN=JCGZ_15888 PE=3 SV=1
Gene Ontology
ID GO:0005871
description chromosome-associated kinesin kif4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35488: 285862-286663 , PASA_asmbl_35489: 287130-289698 , PASA_asmbl_35490: 300143-301087 , PASA_asmbl_35491: 303305-304760 , PASA_asmbl_35492: 303305-304386 , PASA_asmbl_35493: 304959-307071 , PASA_asmbl_35494: 307086-307514 , PASA_asmbl_35495: 307525-308778
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000034_150 0.0 - - PREDICTED: kinesin-like protein BC2 [Jatropha curcas]
2 Hb_002205_180 0.1177085993 - - PREDICTED: uncharacterized protein LOC105649178 [Jatropha curcas]
3 Hb_014497_070 0.1423579463 - - PREDICTED: cyclin-dependent kinase B2-2 [Jatropha curcas]
4 Hb_004102_090 0.143545361 transcription factor TF Family: CPP hypothetical protein JCGZ_06186 [Jatropha curcas]
5 Hb_124677_050 0.1451586132 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000663_070 0.1524975163 - - cyclin A, putative [Ricinus communis]
7 Hb_000638_240 0.1536458688 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os01g0234100-like [Prunus mume]
8 Hb_101133_050 0.1583457519 - - PREDICTED: condensin complex subunit 3 [Jatropha curcas]
9 Hb_002311_090 0.1601047455 - - PREDICTED: uncharacterized protein LOC105643503 [Jatropha curcas]
10 Hb_003228_050 0.1607693315 - - chromomethylase [Hevea brasiliensis]
11 Hb_003109_010 0.1611389757 - - PREDICTED: kinesin-like protein KIN12B [Jatropha curcas]
12 Hb_010436_080 0.1617618817 - - PREDICTED: DNA replication licensing factor MCM5 [Jatropha curcas]
13 Hb_000111_430 0.1624085543 - - PREDICTED: cytosolic sulfotransferase 15-like [Jatropha curcas]
14 Hb_001501_070 0.1643579977 - - PREDICTED: condensin complex subunit 2 [Jatropha curcas]
15 Hb_000190_220 0.1650524069 - - PREDICTED: serine/threonine-protein kinase Nek2 [Jatropha curcas]
16 Hb_004129_060 0.1650593118 - - triacylglycerol lipase, putative [Ricinus communis]
17 Hb_001780_080 0.1657022644 - - PREDICTED: tubulin beta-2 chain [Jatropha curcas]
18 Hb_007474_020 0.1657884374 - - multicopper oxidase, putative [Ricinus communis]
19 Hb_001584_360 0.16580521 - - PREDICTED: serine/threonine-protein kinase haspin homolog hrk1 [Jatropha curcas]
20 Hb_000334_120 0.1677177064 - - PREDICTED: DNA topoisomerase 2 [Jatropha curcas]

Gene co-expression network

sample Hb_000034_150 Hb_000034_150 Hb_002205_180 Hb_002205_180 Hb_000034_150--Hb_002205_180 Hb_014497_070 Hb_014497_070 Hb_000034_150--Hb_014497_070 Hb_004102_090 Hb_004102_090 Hb_000034_150--Hb_004102_090 Hb_124677_050 Hb_124677_050 Hb_000034_150--Hb_124677_050 Hb_000663_070 Hb_000663_070 Hb_000034_150--Hb_000663_070 Hb_000638_240 Hb_000638_240 Hb_000034_150--Hb_000638_240 Hb_002205_180--Hb_004102_090 Hb_000189_350 Hb_000189_350 Hb_002205_180--Hb_000189_350 Hb_000441_210 Hb_000441_210 Hb_002205_180--Hb_000441_210 Hb_010705_040 Hb_010705_040 Hb_002205_180--Hb_010705_040 Hb_006520_030 Hb_006520_030 Hb_002205_180--Hb_006520_030 Hb_033152_060 Hb_033152_060 Hb_002205_180--Hb_033152_060 Hb_014497_070--Hb_010705_040 Hb_011360_130 Hb_011360_130 Hb_014497_070--Hb_011360_130 Hb_001755_040 Hb_001755_040 Hb_014497_070--Hb_001755_040 Hb_014497_070--Hb_002205_180 Hb_002232_310 Hb_002232_310 Hb_014497_070--Hb_002232_310 Hb_014497_070--Hb_000441_210 Hb_004963_020 Hb_004963_020 Hb_004102_090--Hb_004963_020 Hb_004102_090--Hb_000441_210 Hb_000316_070 Hb_000316_070 Hb_004102_090--Hb_000316_070 Hb_004102_090--Hb_006520_030 Hb_004102_090--Hb_000189_350 Hb_003360_010 Hb_003360_010 Hb_124677_050--Hb_003360_010 Hb_007632_210 Hb_007632_210 Hb_124677_050--Hb_007632_210 Hb_005183_150 Hb_005183_150 Hb_124677_050--Hb_005183_150 Hb_002284_260 Hb_002284_260 Hb_124677_050--Hb_002284_260 Hb_002311_090 Hb_002311_090 Hb_124677_050--Hb_002311_090 Hb_003228_050 Hb_003228_050 Hb_124677_050--Hb_003228_050 Hb_000172_090 Hb_000172_090 Hb_000663_070--Hb_000172_090 Hb_006570_040 Hb_006570_040 Hb_000663_070--Hb_006570_040 Hb_000028_240 Hb_000028_240 Hb_000663_070--Hb_000028_240 Hb_000556_130 Hb_000556_130 Hb_000663_070--Hb_000556_130 Hb_001780_080 Hb_001780_080 Hb_000663_070--Hb_001780_080 Hb_000260_380 Hb_000260_380 Hb_000638_240--Hb_000260_380 Hb_005542_150 Hb_005542_150 Hb_000638_240--Hb_005542_150 Hb_000576_140 Hb_000576_140 Hb_000638_240--Hb_000576_140 Hb_001999_160 Hb_001999_160 Hb_000638_240--Hb_001999_160 Hb_003109_010 Hb_003109_010 Hb_000638_240--Hb_003109_010 Hb_003106_090 Hb_003106_090 Hb_000638_240--Hb_003106_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.273047 0.480171 10.1265 5.58848 0.0834861 0.255624
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0312756 1.0461 0.035572 1.25131 0.767587

CAGE analysis