Hb_000638_240

Information

Type transcription factor
Description TF Family: B3
Location Contig638: 175059-178238
Sequence    

Annotation

kegg
ID pmum:103335293
description B3 domain-containing protein Os01g0234100-like
nr
ID XP_008236526.1
description PREDICTED: B3 domain-containing protein Os01g0234100-like [Prunus mume]
swissprot
ID Q0JP99
description B3 domain-containing protein Os01g0234100 OS=Oryza sativa subsp. japonica GN=Os01g0234100 PE=2 SV=1
trembl
ID M5VKU1
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa015021mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52035: 176555-178089
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000638_240 0.0 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os01g0234100-like [Prunus mume]
2 Hb_000260_380 0.1357196798 - - PREDICTED: cell division control protein 2 homolog C [Jatropha curcas]
3 Hb_005542_150 0.1364235445 - - PREDICTED: uncharacterized protein LOC105649178 [Jatropha curcas]
4 Hb_000576_140 0.1405489737 - - PREDICTED: uncharacterized protein LOC105638282 [Jatropha curcas]
5 Hb_001999_160 0.1407382116 - - hypothetical protein JCGZ_08488 [Jatropha curcas]
6 Hb_003109_010 0.1417185863 - - PREDICTED: kinesin-like protein KIN12B [Jatropha curcas]
7 Hb_003106_090 0.1420977692 transcription factor TF Family: E2F-DP E2F, putative [Ricinus communis]
8 Hb_003813_090 0.1421282023 - - PREDICTED: uncharacterized protein LOC105638743 [Jatropha curcas]
9 Hb_001524_120 0.1460859367 - - myo-inositol-1 phosphate synthase [Hevea brasiliensis]
10 Hb_003228_050 0.1472366744 - - chromomethylase [Hevea brasiliensis]
11 Hb_005305_160 0.1480050725 - - conserved hypothetical protein [Ricinus communis]
12 Hb_024682_030 0.1481524391 - - PREDICTED: DNA replication licensing factor MCM2 [Jatropha curcas]
13 Hb_004129_060 0.1484514028 - - triacylglycerol lipase, putative [Ricinus communis]
14 Hb_001823_090 0.1496875727 - - conserved hypothetical protein [Ricinus communis]
15 Hb_003666_070 0.1497188167 - - PREDICTED: BTB/POZ domain-containing protein At5g66560 [Jatropha curcas]
16 Hb_000320_310 0.1498910217 - - PREDICTED: ankyrin repeat domain-containing protein 13C [Jatropha curcas]
17 Hb_000120_340 0.1518288233 - - Cucumisin precursor, putative [Ricinus communis]
18 Hb_124677_050 0.1535319512 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000034_150 0.1536458688 - - PREDICTED: kinesin-like protein BC2 [Jatropha curcas]
20 Hb_001348_100 0.1540411495 - - PREDICTED: uncharacterized protein LOC105638934 [Jatropha curcas]

Gene co-expression network

sample Hb_000638_240 Hb_000638_240 Hb_000260_380 Hb_000260_380 Hb_000638_240--Hb_000260_380 Hb_005542_150 Hb_005542_150 Hb_000638_240--Hb_005542_150 Hb_000576_140 Hb_000576_140 Hb_000638_240--Hb_000576_140 Hb_001999_160 Hb_001999_160 Hb_000638_240--Hb_001999_160 Hb_003109_010 Hb_003109_010 Hb_000638_240--Hb_003109_010 Hb_003106_090 Hb_003106_090 Hb_000638_240--Hb_003106_090 Hb_000297_210 Hb_000297_210 Hb_000260_380--Hb_000297_210 Hb_000260_380--Hb_005542_150 Hb_001348_100 Hb_001348_100 Hb_000260_380--Hb_001348_100 Hb_000260_380--Hb_001999_160 Hb_003666_070 Hb_003666_070 Hb_000260_380--Hb_003666_070 Hb_005542_150--Hb_003106_090 Hb_005542_150--Hb_001999_160 Hb_000345_450 Hb_000345_450 Hb_005542_150--Hb_000345_450 Hb_033041_010 Hb_033041_010 Hb_005542_150--Hb_033041_010 Hb_000085_360 Hb_000085_360 Hb_005542_150--Hb_000085_360 Hb_101133_050 Hb_101133_050 Hb_005542_150--Hb_101133_050 Hb_000317_120 Hb_000317_120 Hb_000576_140--Hb_000317_120 Hb_000742_180 Hb_000742_180 Hb_000576_140--Hb_000742_180 Hb_000830_010 Hb_000830_010 Hb_000576_140--Hb_000830_010 Hb_000576_140--Hb_003106_090 Hb_016898_020 Hb_016898_020 Hb_000576_140--Hb_016898_020 Hb_005276_190 Hb_005276_190 Hb_000576_140--Hb_005276_190 Hb_002081_060 Hb_002081_060 Hb_001999_160--Hb_002081_060 Hb_000954_040 Hb_000954_040 Hb_001999_160--Hb_000954_040 Hb_000260_670 Hb_000260_670 Hb_001999_160--Hb_000260_670 Hb_002700_030 Hb_002700_030 Hb_001999_160--Hb_002700_030 Hb_003228_050 Hb_003228_050 Hb_001999_160--Hb_003228_050 Hb_003109_010--Hb_033041_010 Hb_007632_080 Hb_007632_080 Hb_003109_010--Hb_007632_080 Hb_002232_310 Hb_002232_310 Hb_003109_010--Hb_002232_310 Hb_001584_360 Hb_001584_360 Hb_003109_010--Hb_001584_360 Hb_003109_010--Hb_101133_050 Hb_007943_180 Hb_007943_180 Hb_003109_010--Hb_007943_180 Hb_005276_090 Hb_005276_090 Hb_003106_090--Hb_005276_090 Hb_003106_090--Hb_000085_360 Hb_000038_070 Hb_000038_070 Hb_003106_090--Hb_000038_070 Hb_003106_090--Hb_000317_120 Hb_000856_390 Hb_000856_390 Hb_003106_090--Hb_000856_390
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0378344 0.0580504 0.815304 0.531577 0 0.0133398
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0272671 0 0.130779 0.170452

CAGE analysis