Hb_001999_160

Information

Type -
Description -
Location Contig1999: 156647-162940
Sequence    

Annotation

kegg
ID tcc:TCM_041648
description Cell division control 6 isoform 3
nr
ID KDP46516.1
description hypothetical protein JCGZ_08488 [Jatropha curcas]
swissprot
ID Q8W032
description Cell division control protein 6 homolog B OS=Arabidopsis thaliana GN=CDC6B PE=2 SV=1
trembl
ID A0A067LDE9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08488 PE=4 SV=1
Gene Ontology
ID GO:0005524
description cell division control protein 6 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20034: 156285-156777 , PASA_asmbl_20035: 157037-158324 , PASA_asmbl_20036: 159682-161971
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001999_160 0.0 - - hypothetical protein JCGZ_08488 [Jatropha curcas]
2 Hb_005542_150 0.0896698732 - - PREDICTED: uncharacterized protein LOC105649178 [Jatropha curcas]
3 Hb_002081_060 0.1106421826 - - cyclin d, putative [Ricinus communis]
4 Hb_000954_040 0.1126560508 - - PREDICTED: metal tolerance protein 4 [Jatropha curcas]
5 Hb_000260_670 0.1135883499 - - PREDICTED: serine/threonine-protein kinase TIO isoform X1 [Jatropha curcas]
6 Hb_002700_030 0.113654237 - - PREDICTED: serine carboxypeptidase-like 45 [Jatropha curcas]
7 Hb_003228_050 0.1146630855 - - chromomethylase [Hevea brasiliensis]
8 Hb_000077_300 0.1163867315 - - PREDICTED: expansin-B3-like [Jatropha curcas]
9 Hb_005305_160 0.1170397574 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000359_180 0.1208185818 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001524_120 0.124805856 - - myo-inositol-1 phosphate synthase [Hevea brasiliensis]
12 Hb_002871_130 0.1291619628 - - PREDICTED: non-structural maintenance of chromosomes element 4 homolog A isoform X2 [Jatropha curcas]
13 Hb_080147_070 0.1293250824 - - Rop5 [Hevea brasiliensis]
14 Hb_033041_010 0.1301116434 - - PREDICTED: phragmoplast orienting kinesin 2-like [Populus euphratica]
15 Hb_003360_010 0.1305384663 - - Bipolar kinesin KRP-130, putative [Ricinus communis]
16 Hb_005183_150 0.1326936961 - - PREDICTED: protein CYPRO4 [Jatropha curcas]
17 Hb_000260_380 0.1332208875 - - PREDICTED: cell division control protein 2 homolog C [Jatropha curcas]
18 Hb_001369_550 0.1335138455 - - 21 kDa protein precursor, putative [Ricinus communis]
19 Hb_002030_130 0.1367935158 - - hypothetical protein CARUB_v10021660mg, partial [Capsella rubella]
20 Hb_001454_270 0.1368006827 - - PREDICTED: condensin-2 complex subunit D3 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_001999_160 Hb_001999_160 Hb_005542_150 Hb_005542_150 Hb_001999_160--Hb_005542_150 Hb_002081_060 Hb_002081_060 Hb_001999_160--Hb_002081_060 Hb_000954_040 Hb_000954_040 Hb_001999_160--Hb_000954_040 Hb_000260_670 Hb_000260_670 Hb_001999_160--Hb_000260_670 Hb_002700_030 Hb_002700_030 Hb_001999_160--Hb_002700_030 Hb_003228_050 Hb_003228_050 Hb_001999_160--Hb_003228_050 Hb_003106_090 Hb_003106_090 Hb_005542_150--Hb_003106_090 Hb_000345_450 Hb_000345_450 Hb_005542_150--Hb_000345_450 Hb_033041_010 Hb_033041_010 Hb_005542_150--Hb_033041_010 Hb_000085_360 Hb_000085_360 Hb_005542_150--Hb_000085_360 Hb_101133_050 Hb_101133_050 Hb_005542_150--Hb_101133_050 Hb_000205_180 Hb_000205_180 Hb_002081_060--Hb_000205_180 Hb_001310_060 Hb_001310_060 Hb_002081_060--Hb_001310_060 Hb_001369_550 Hb_001369_550 Hb_002081_060--Hb_001369_550 Hb_004607_020 Hb_004607_020 Hb_002081_060--Hb_004607_020 Hb_003626_020 Hb_003626_020 Hb_002081_060--Hb_003626_020 Hb_000954_040--Hb_000260_670 Hb_011861_040 Hb_011861_040 Hb_000954_040--Hb_011861_040 Hb_000954_040--Hb_001369_550 Hb_080147_070 Hb_080147_070 Hb_000954_040--Hb_080147_070 Hb_000954_040--Hb_002700_030 Hb_000260_670--Hb_080147_070 Hb_000272_010 Hb_000272_010 Hb_000260_670--Hb_000272_010 Hb_003360_010 Hb_003360_010 Hb_000260_670--Hb_003360_010 Hb_001366_380 Hb_001366_380 Hb_000260_670--Hb_001366_380 Hb_000260_670--Hb_002700_030 Hb_000077_300 Hb_000077_300 Hb_002700_030--Hb_000077_300 Hb_002700_030--Hb_080147_070 Hb_001284_070 Hb_001284_070 Hb_002700_030--Hb_001284_070 Hb_002757_010 Hb_002757_010 Hb_002700_030--Hb_002757_010 Hb_002700_030--Hb_001310_060 Hb_003902_070 Hb_003902_070 Hb_002700_030--Hb_003902_070 Hb_002030_130 Hb_002030_130 Hb_003228_050--Hb_002030_130 Hb_001524_120 Hb_001524_120 Hb_003228_050--Hb_001524_120 Hb_007632_210 Hb_007632_210 Hb_003228_050--Hb_007632_210 Hb_124677_050 Hb_124677_050 Hb_003228_050--Hb_124677_050 Hb_003228_050--Hb_101133_050 Hb_000956_050 Hb_000956_050 Hb_003228_050--Hb_000956_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0714443 0.0776162 3.38666 1.9302 0.0365903 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0296584 0.0700008 0 0.884284 0.635759

CAGE analysis