Hb_011861_040

Information

Type -
Description -
Location Contig11861: 40644-43928
Sequence    

Annotation

kegg
ID vvi:100259959
description calsequestrin-1
nr
ID XP_012073114.1
description PREDICTED: pheromone-processing carboxypeptidase KEX1-like [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KLA6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06092 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05521: 40659-43440
cDNA
(Sanger)
(ID:Location)		 001_E11.ab1: 40675-43440 , 016_A12.ab1: 40742-43440 , 042_J09.ab1: 40675-43388

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011861_040 0.0 - - PREDICTED: pheromone-processing carboxypeptidase KEX1-like [Jatropha curcas]
2 Hb_000954_040 0.0925255994 - - PREDICTED: metal tolerance protein 4 [Jatropha curcas]
3 Hb_002871_130 0.1093287733 - - PREDICTED: non-structural maintenance of chromosomes element 4 homolog A isoform X2 [Jatropha curcas]
4 Hb_000260_670 0.1144994274 - - PREDICTED: serine/threonine-protein kinase TIO isoform X1 [Jatropha curcas]
5 Hb_001649_050 0.129840771 - - Shaggy-like kinase 13 isoform 1 [Theobroma cacao]
6 Hb_003360_010 0.1322125991 - - Bipolar kinesin KRP-130, putative [Ricinus communis]
7 Hb_080147_070 0.1338440566 - - Rop5 [Hevea brasiliensis]
8 Hb_002284_260 0.1340679227 - - brca1 interacting protein helicase 1 brip1, putative [Ricinus communis]
9 Hb_001369_550 0.1343588093 - - 21 kDa protein precursor, putative [Ricinus communis]
10 Hb_001328_070 0.1345581055 - - PREDICTED: glucan endo-1,3-beta-glucosidase 13 [Jatropha curcas]
11 Hb_005183_150 0.1363371832 - - PREDICTED: protein CYPRO4 [Jatropha curcas]
12 Hb_001999_160 0.1369282548 - - hypothetical protein JCGZ_08488 [Jatropha curcas]
13 Hb_000958_040 0.1385126904 - - PREDICTED: DNA topoisomerase 2 [Jatropha curcas]
14 Hb_033041_010 0.1406337483 - - PREDICTED: phragmoplast orienting kinesin 2-like [Populus euphratica]
15 Hb_002081_060 0.1437670262 - - cyclin d, putative [Ricinus communis]
16 Hb_000272_010 0.1443065163 - - PREDICTED: DNA replication licensing factor MCM5 [Jatropha curcas]
17 Hb_004531_080 0.1447637131 - - hypothetical protein RCOM_1491960 [Ricinus communis]
18 Hb_093458_020 0.1456886488 desease resistance Gene Name: AAA PREDICTED: chromosome transmission fidelity protein 18 homolog [Jatropha curcas]
19 Hb_004607_020 0.1467688564 - - PREDICTED: E3 ubiquitin ligase BIG BROTHER-like [Jatropha curcas]
20 Hb_007163_030 0.1477935596 - - hypothetical protein RCOM_0187400 [Ricinus communis]

Gene co-expression network

sample Hb_011861_040 Hb_011861_040 Hb_000954_040 Hb_000954_040 Hb_011861_040--Hb_000954_040 Hb_002871_130 Hb_002871_130 Hb_011861_040--Hb_002871_130 Hb_000260_670 Hb_000260_670 Hb_011861_040--Hb_000260_670 Hb_001649_050 Hb_001649_050 Hb_011861_040--Hb_001649_050 Hb_003360_010 Hb_003360_010 Hb_011861_040--Hb_003360_010 Hb_080147_070 Hb_080147_070 Hb_011861_040--Hb_080147_070 Hb_000954_040--Hb_000260_670 Hb_001369_550 Hb_001369_550 Hb_000954_040--Hb_001369_550 Hb_000954_040--Hb_080147_070 Hb_002700_030 Hb_002700_030 Hb_000954_040--Hb_002700_030 Hb_001999_160 Hb_001999_160 Hb_000954_040--Hb_001999_160 Hb_004007_130 Hb_004007_130 Hb_002871_130--Hb_004007_130 Hb_004531_080 Hb_004531_080 Hb_002871_130--Hb_004531_080 Hb_002284_260 Hb_002284_260 Hb_002871_130--Hb_002284_260 Hb_093458_020 Hb_093458_020 Hb_002871_130--Hb_093458_020 Hb_000483_080 Hb_000483_080 Hb_002871_130--Hb_000483_080 Hb_000260_670--Hb_080147_070 Hb_000272_010 Hb_000272_010 Hb_000260_670--Hb_000272_010 Hb_000260_670--Hb_003360_010 Hb_001366_380 Hb_001366_380 Hb_000260_670--Hb_001366_380 Hb_000260_670--Hb_002700_030 Hb_005306_030 Hb_005306_030 Hb_001649_050--Hb_005306_030 Hb_011849_030 Hb_011849_030 Hb_001649_050--Hb_011849_030 Hb_004607_020 Hb_004607_020 Hb_001649_050--Hb_004607_020 Hb_001649_050--Hb_001366_380 Hb_004316_080 Hb_004316_080 Hb_001649_050--Hb_004316_080 Hb_001649_050--Hb_000260_670 Hb_024682_030 Hb_024682_030 Hb_003360_010--Hb_024682_030 Hb_000431_100 Hb_000431_100 Hb_003360_010--Hb_000431_100 Hb_124677_050 Hb_124677_050 Hb_003360_010--Hb_124677_050 Hb_001524_120 Hb_001524_120 Hb_003360_010--Hb_001524_120 Hb_005183_150 Hb_005183_150 Hb_003360_010--Hb_005183_150 Hb_001284_070 Hb_001284_070 Hb_080147_070--Hb_001284_070 Hb_080147_070--Hb_002700_030 Hb_080147_070--Hb_001369_550 Hb_001310_060 Hb_001310_060 Hb_080147_070--Hb_001310_060 Hb_080147_070--Hb_004607_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.998161 1.0331 27.0524 11.4691 0 0.296649
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.15444 0.424964 0.543655 9.52092 3.85782

CAGE analysis