Hb_005542_150

Information

Type -
Description -
Location Contig5542: 118153-121539
Sequence    

Annotation

kegg
ID rcu:RCOM_0690110
description hypothetical protein
nr
ID XP_012091142.1
description PREDICTED: uncharacterized protein LOC105649178 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JFT4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03319 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48442: 119246-120105 , PASA_asmbl_48443: 120426-120764 , PASA_asmbl_48444: 120834-121799
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005542_150 0.0 - - PREDICTED: uncharacterized protein LOC105649178 [Jatropha curcas]
2 Hb_003106_090 0.0862856059 transcription factor TF Family: E2F-DP E2F, putative [Ricinus communis]
3 Hb_001999_160 0.0896698732 - - hypothetical protein JCGZ_08488 [Jatropha curcas]
4 Hb_000345_450 0.1001094098 - - PREDICTED: microtubule-binding protein TANGLED [Jatropha curcas]
5 Hb_033041_010 0.1016329639 - - PREDICTED: phragmoplast orienting kinesin 2-like [Populus euphratica]
6 Hb_000085_360 0.1017908831 - - PREDICTED: kinesin-like protein KIN12B [Jatropha curcas]
7 Hb_101133_050 0.1038196087 - - PREDICTED: condensin complex subunit 3 [Jatropha curcas]
8 Hb_001454_270 0.1065152236 - - PREDICTED: condensin-2 complex subunit D3 isoform X2 [Jatropha curcas]
9 Hb_005183_150 0.1069830239 - - PREDICTED: protein CYPRO4 [Jatropha curcas]
10 Hb_001348_100 0.1082690382 - - PREDICTED: uncharacterized protein LOC105638934 [Jatropha curcas]
11 Hb_020301_020 0.1091754812 - - calmodulin binding protein, putative [Ricinus communis]
12 Hb_000576_140 0.1101576857 - - PREDICTED: uncharacterized protein LOC105638282 [Jatropha curcas]
13 Hb_002700_030 0.1119094647 - - PREDICTED: serine carboxypeptidase-like 45 [Jatropha curcas]
14 Hb_003228_050 0.1132417019 - - chromomethylase [Hevea brasiliensis]
15 Hb_000030_080 0.1141928651 - - PREDICTED: uncharacterized protein LOC105632640 [Jatropha curcas]
16 Hb_000260_670 0.1149222429 - - PREDICTED: serine/threonine-protein kinase TIO isoform X1 [Jatropha curcas]
17 Hb_003902_070 0.1159799325 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001950_090 0.1162164051 - - PREDICTED: microtubule-associated protein RP/EB family member 1C [Jatropha curcas]
19 Hb_005276_090 0.1184115216 - - PREDICTED: uncharacterized protein LOC105649997 isoform X2 [Jatropha curcas]
20 Hb_001699_270 0.1187976083 - - PREDICTED: uncharacterized protein LOC105628996 [Jatropha curcas]

Gene co-expression network

sample Hb_005542_150 Hb_005542_150 Hb_003106_090 Hb_003106_090 Hb_005542_150--Hb_003106_090 Hb_001999_160 Hb_001999_160 Hb_005542_150--Hb_001999_160 Hb_000345_450 Hb_000345_450 Hb_005542_150--Hb_000345_450 Hb_033041_010 Hb_033041_010 Hb_005542_150--Hb_033041_010 Hb_000085_360 Hb_000085_360 Hb_005542_150--Hb_000085_360 Hb_101133_050 Hb_101133_050 Hb_005542_150--Hb_101133_050 Hb_005276_090 Hb_005276_090 Hb_003106_090--Hb_005276_090 Hb_003106_090--Hb_000085_360 Hb_000038_070 Hb_000038_070 Hb_003106_090--Hb_000038_070 Hb_000317_120 Hb_000317_120 Hb_003106_090--Hb_000317_120 Hb_000856_390 Hb_000856_390 Hb_003106_090--Hb_000856_390 Hb_002081_060 Hb_002081_060 Hb_001999_160--Hb_002081_060 Hb_000954_040 Hb_000954_040 Hb_001999_160--Hb_000954_040 Hb_000260_670 Hb_000260_670 Hb_001999_160--Hb_000260_670 Hb_002700_030 Hb_002700_030 Hb_001999_160--Hb_002700_030 Hb_003228_050 Hb_003228_050 Hb_001999_160--Hb_003228_050 Hb_000480_060 Hb_000480_060 Hb_000345_450--Hb_000480_060 Hb_000701_020 Hb_000701_020 Hb_000345_450--Hb_000701_020 Hb_001307_150 Hb_001307_150 Hb_000345_450--Hb_001307_150 Hb_001950_090 Hb_001950_090 Hb_000345_450--Hb_001950_090 Hb_001699_270 Hb_001699_270 Hb_000345_450--Hb_001699_270 Hb_006588_100 Hb_006588_100 Hb_000345_450--Hb_006588_100 Hb_007632_080 Hb_007632_080 Hb_033041_010--Hb_007632_080 Hb_000334_120 Hb_000334_120 Hb_033041_010--Hb_000334_120 Hb_005183_150 Hb_005183_150 Hb_033041_010--Hb_005183_150 Hb_033041_010--Hb_101133_050 Hb_000028_530 Hb_000028_530 Hb_033041_010--Hb_000028_530 Hb_033041_010--Hb_005276_090 Hb_119044_040 Hb_119044_040 Hb_000085_360--Hb_119044_040 Hb_004631_040 Hb_004631_040 Hb_000085_360--Hb_004631_040 Hb_000085_360--Hb_005276_090 Hb_001279_110 Hb_001279_110 Hb_000085_360--Hb_001279_110 Hb_000085_360--Hb_000038_070 Hb_080952_060 Hb_080952_060 Hb_000085_360--Hb_080952_060 Hb_002311_090 Hb_002311_090 Hb_101133_050--Hb_002311_090 Hb_101133_050--Hb_001307_150 Hb_007474_020 Hb_007474_020 Hb_101133_050--Hb_007474_020 Hb_016898_020 Hb_016898_020 Hb_101133_050--Hb_016898_020 Hb_101133_050--Hb_000317_120 Hb_101133_050--Hb_005276_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0772154 0.114872 4.39395 2.69039 0.0103277 0.0096591
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0501738 0.0197383 0 0.817474 0.540684

CAGE analysis