Hb_000663_070

Information

Type -
Description -
Location Contig663: 80447-83661
Sequence    

Annotation

kegg
ID rcu:RCOM_0174240
description cyclin A, putative
nr
ID XP_002527469.1
description cyclin A, putative [Ricinus communis]
swissprot
ID Q3ECW2
description Cyclin-A3-4 OS=Arabidopsis thaliana GN=CYCA3-4 PE=1 SV=1
trembl
ID B9SNA0
description Cyclin A, putative OS=Ricinus communis GN=RCOM_0174240 PE=3 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53098: 80638-80907 , PASA_asmbl_53099: 83481-84226
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000663_070 0.0 - - cyclin A, putative [Ricinus communis]
2 Hb_000034_150 0.1524975163 - - PREDICTED: kinesin-like protein BC2 [Jatropha curcas]
3 Hb_000172_090 0.1852102392 - - PREDICTED: uncharacterized protein LOC105650755 [Jatropha curcas]
4 Hb_006570_040 0.1860387887 - - hypothetical protein CICLE_v10002683mg [Citrus clementina]
5 Hb_000028_240 0.1862705315 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000556_130 0.188284506 - - PREDICTED: serine/threonine-protein kinase Aurora-3 [Jatropha curcas]
7 Hb_001780_080 0.1891367115 - - PREDICTED: tubulin beta-2 chain [Jatropha curcas]
8 Hb_002979_030 0.1911640994 - - PREDICTED: serine/threonine-protein kinase Aurora-1 isoform X2 [Jatropha curcas]
9 Hb_002205_180 0.1926792836 - - PREDICTED: uncharacterized protein LOC105649178 [Jatropha curcas]
10 Hb_010436_080 0.1942582373 - - PREDICTED: DNA replication licensing factor MCM5 [Jatropha curcas]
11 Hb_000111_430 0.1952948025 - - PREDICTED: cytosolic sulfotransferase 15-like [Jatropha curcas]
12 Hb_001410_030 0.2017647383 - - hypothetical protein JCGZ_20419 [Jatropha curcas]
13 Hb_002007_040 0.2037650131 - - unnamed protein product [Coffea canephora]
14 Hb_000139_280 0.2038138685 - - PREDICTED: mitogen-activated protein kinase kinase kinase NPK1 isoform X1 [Jatropha curcas]
15 Hb_000190_220 0.2084482615 - - PREDICTED: serine/threonine-protein kinase Nek2 [Jatropha curcas]
16 Hb_014497_070 0.2090834469 - - PREDICTED: cyclin-dependent kinase B2-2 [Jatropha curcas]
17 Hb_001501_070 0.2095514368 - - PREDICTED: condensin complex subunit 2 [Jatropha curcas]
18 Hb_004449_040 0.2097794146 - - PREDICTED: uncharacterized protein C630.12 [Jatropha curcas]
19 Hb_003540_020 0.2107811122 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000003_060 0.2109984008 transcription factor TF Family: HMG DNA-binding protein MNB1B, putative [Ricinus communis]

Gene co-expression network

sample Hb_000663_070 Hb_000663_070 Hb_000034_150 Hb_000034_150 Hb_000663_070--Hb_000034_150 Hb_000172_090 Hb_000172_090 Hb_000663_070--Hb_000172_090 Hb_006570_040 Hb_006570_040 Hb_000663_070--Hb_006570_040 Hb_000028_240 Hb_000028_240 Hb_000663_070--Hb_000028_240 Hb_000556_130 Hb_000556_130 Hb_000663_070--Hb_000556_130 Hb_001780_080 Hb_001780_080 Hb_000663_070--Hb_001780_080 Hb_002205_180 Hb_002205_180 Hb_000034_150--Hb_002205_180 Hb_014497_070 Hb_014497_070 Hb_000034_150--Hb_014497_070 Hb_004102_090 Hb_004102_090 Hb_000034_150--Hb_004102_090 Hb_124677_050 Hb_124677_050 Hb_000034_150--Hb_124677_050 Hb_000638_240 Hb_000638_240 Hb_000034_150--Hb_000638_240 Hb_000500_340 Hb_000500_340 Hb_000172_090--Hb_000500_340 Hb_000139_280 Hb_000139_280 Hb_000172_090--Hb_000139_280 Hb_000260_040 Hb_000260_040 Hb_000172_090--Hb_000260_040 Hb_003228_050 Hb_003228_050 Hb_000172_090--Hb_003228_050 Hb_007632_210 Hb_007632_210 Hb_000172_090--Hb_007632_210 Hb_000155_150 Hb_000155_150 Hb_000172_090--Hb_000155_150 Hb_005946_020 Hb_005946_020 Hb_006570_040--Hb_005946_020 Hb_006570_040--Hb_000028_240 Hb_006570_040--Hb_000139_280 Hb_000190_220 Hb_000190_220 Hb_006570_040--Hb_000190_220 Hb_006570_040--Hb_000260_040 Hb_000956_050 Hb_000956_050 Hb_006570_040--Hb_000956_050 Hb_002979_030 Hb_002979_030 Hb_000028_240--Hb_002979_030 Hb_000028_250 Hb_000028_250 Hb_000028_240--Hb_000028_250 Hb_005162_120 Hb_005162_120 Hb_000028_240--Hb_005162_120 Hb_000441_210 Hb_000441_210 Hb_000028_240--Hb_000441_210 Hb_000028_240--Hb_002205_180 Hb_001329_010 Hb_001329_010 Hb_000556_130--Hb_001329_010 Hb_007617_040 Hb_007617_040 Hb_000556_130--Hb_007617_040 Hb_004619_090 Hb_004619_090 Hb_000556_130--Hb_004619_090 Hb_003813_110 Hb_003813_110 Hb_000556_130--Hb_003813_110 Hb_000656_320 Hb_000656_320 Hb_000556_130--Hb_000656_320 Hb_001478_020 Hb_001478_020 Hb_001780_080--Hb_001478_020 Hb_003784_040 Hb_003784_040 Hb_001780_080--Hb_003784_040 Hb_010180_030 Hb_010180_030 Hb_001780_080--Hb_010180_030 Hb_001501_070 Hb_001501_070 Hb_001780_080--Hb_001501_070 Hb_001780_080--Hb_000139_280 Hb_000365_210 Hb_000365_210 Hb_001780_080--Hb_000365_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.137239 0.0581655 2.65679 1.38507 0 0.014648
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.114196 0.509048 0 0.251659 0.1243

CAGE analysis