Hb_000948_200

Information

Type -
Description -
Location Contig948: 194695-195105
Sequence    

Annotation

kegg
ID atr:s00030p00044250
description AMTR_s00030p00044250; hypothetical protein
nr
ID XP_006301260.1
description hypothetical protein CARUB_v10021660mg, partial [Capsella rubella]
swissprot
ID Q76MV0
description Histone H3.2 OS=Nicotiana tabacum GN=B34 PE=1 SV=1
trembl
ID B8B1H8
description Histone H3 OS=Oryza sativa subsp. indica GN=OsI_21765 PE=3 SV=1
Gene Ontology
ID GO:0000786
description histone

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63327: 194105-194334
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000948_200 0.0 - - hypothetical protein CARUB_v10021660mg, partial [Capsella rubella]
2 Hb_000544_030 0.1270933738 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000217_020 0.1561758107 - - AMME syndrome candidateprotein 1 protein, putative [Ricinus communis]
4 Hb_000123_270 0.164741455 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000005_110 0.1682383806 - - histone H2B1 [Hevea brasiliensis]
6 Hb_003020_210 0.1722072002 - - Structural maintenance of chromosomes 2-2 -like protein [Gossypium arboreum]
7 Hb_083380_020 0.1735219793 - - PREDICTED: LAG1 longevity assurance homolog 2 [Jatropha curcas]
8 Hb_000282_050 0.1818527079 - - calcineurin B, putative [Ricinus communis]
9 Hb_004093_020 0.1851575648 - - Calcium-binding EF-hand family protein [Theobroma cacao]
10 Hb_001208_040 0.1885732792 - - hypothetical protein CISIN_1g025613mg [Citrus sinensis]
11 Hb_002960_130 0.1915630246 - - hypothetical protein B456_008G036100 [Gossypium raimondii]
12 Hb_010368_050 0.1922046701 - - PREDICTED: uncharacterized protein C1450.15 [Jatropha curcas]
13 Hb_006970_140 0.1942744066 - - PREDICTED: histone H3.2-like [Solanum lycopersicum]
14 Hb_001951_130 0.1952981358 - - PREDICTED: coatomer subunit zeta-1-like [Jatropha curcas]
15 Hb_009615_020 0.1984503375 transcription factor TF Family: HMG PREDICTED: high mobility group B protein 7-like [Jatropha curcas]
16 Hb_188281_030 0.2020298371 - - PREDICTED: uridine nucleosidase 1 [Jatropha curcas]
17 Hb_003669_010 0.2025317677 - - PREDICTED: psbP domain-containing protein 5, chloroplastic [Populus euphratica]
18 Hb_000392_340 0.2026045123 - - PREDICTED: vacuolar protein sorting-associated protein 29 [Jatropha curcas]
19 Hb_000345_460 0.2047376961 - - PREDICTED: mitogen-activated protein kinase kinase kinase ANP1 [Jatropha curcas]
20 Hb_005000_330 0.2064272495 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000948_200 Hb_000948_200 Hb_000544_030 Hb_000544_030 Hb_000948_200--Hb_000544_030 Hb_000217_020 Hb_000217_020 Hb_000948_200--Hb_000217_020 Hb_000123_270 Hb_000123_270 Hb_000948_200--Hb_000123_270 Hb_000005_110 Hb_000005_110 Hb_000948_200--Hb_000005_110 Hb_003020_210 Hb_003020_210 Hb_000948_200--Hb_003020_210 Hb_083380_020 Hb_083380_020 Hb_000948_200--Hb_083380_020 Hb_003669_010 Hb_003669_010 Hb_000544_030--Hb_003669_010 Hb_002960_150 Hb_002960_150 Hb_000544_030--Hb_002960_150 Hb_004093_020 Hb_004093_020 Hb_000544_030--Hb_004093_020 Hb_008566_040 Hb_008566_040 Hb_000544_030--Hb_008566_040 Hb_010488_040 Hb_010488_040 Hb_000544_030--Hb_010488_040 Hb_000392_340 Hb_000392_340 Hb_000217_020--Hb_000392_340 Hb_019181_030 Hb_019181_030 Hb_000217_020--Hb_019181_030 Hb_001951_130 Hb_001951_130 Hb_000217_020--Hb_001951_130 Hb_002960_130 Hb_002960_130 Hb_000217_020--Hb_002960_130 Hb_004032_030 Hb_004032_030 Hb_000217_020--Hb_004032_030 Hb_001208_040 Hb_001208_040 Hb_000217_020--Hb_001208_040 Hb_000123_270--Hb_003020_210 Hb_005000_330 Hb_005000_330 Hb_000123_270--Hb_005000_330 Hb_003758_020 Hb_003758_020 Hb_000123_270--Hb_003758_020 Hb_000123_270--Hb_004093_020 Hb_000123_270--Hb_083380_020 Hb_000345_460 Hb_000345_460 Hb_000005_110--Hb_000345_460 Hb_000364_170 Hb_000364_170 Hb_000005_110--Hb_000364_170 Hb_030627_070 Hb_030627_070 Hb_000005_110--Hb_030627_070 Hb_000740_040 Hb_000740_040 Hb_000005_110--Hb_000740_040 Hb_188281_030 Hb_188281_030 Hb_000005_110--Hb_188281_030 Hb_001221_030 Hb_001221_030 Hb_000005_110--Hb_001221_030 Hb_010368_050 Hb_010368_050 Hb_003020_210--Hb_010368_050 Hb_003020_210--Hb_083380_020 Hb_000539_050 Hb_000539_050 Hb_003020_210--Hb_000539_050 Hb_000215_090 Hb_000215_090 Hb_003020_210--Hb_000215_090 Hb_003020_210--Hb_005000_330 Hb_083380_020--Hb_010368_050 Hb_008147_090 Hb_008147_090 Hb_083380_020--Hb_008147_090 Hb_007101_110 Hb_007101_110 Hb_083380_020--Hb_007101_110 Hb_083380_020--Hb_001951_130 Hb_000181_350 Hb_000181_350 Hb_083380_020--Hb_000181_350 Hb_001511_260 Hb_001511_260 Hb_083380_020--Hb_001511_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
27.9062 6.81963 156.841 206.691 9.37328 48.2352
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
100.69 95.5888 25.669 37.6473 20.0362

CAGE analysis