Hb_003020_210

Information

Type -
Description -
Location Contig3020: 130974-134258
Sequence    

Annotation

kegg
ID cam:101500034
description myosin-11-like
nr
ID KHG14700.1
description Structural maintenance of chromosomes 2-2 -like protein [Gossypium arboreum]
swissprot
ID -
description -
trembl
ID A0A0B0NPD7
description Structural maintenance of chromosomes 2-2-like protein OS=Gossypium arboreum GN=F383_18280 PE=4 SV=1
Gene Ontology
ID GO:0005623
description myosin heavy chain-related protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31853: 130077-130359 , PASA_asmbl_31854: 131460-132104
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003020_210 0.0 - - Structural maintenance of chromosomes 2-2 -like protein [Gossypium arboreum]
2 Hb_010368_050 0.1215931805 - - PREDICTED: uncharacterized protein C1450.15 [Jatropha curcas]
3 Hb_000123_270 0.1354365529 - - conserved hypothetical protein [Ricinus communis]
4 Hb_083380_020 0.1369546542 - - PREDICTED: LAG1 longevity assurance homolog 2 [Jatropha curcas]
5 Hb_000539_050 0.145622712 - - bile acid:sodium symporter, putative [Ricinus communis]
6 Hb_000215_090 0.1469472167 - - cytochrome b5 domain-containing family protein [Populus trichocarpa]
7 Hb_005000_330 0.1528944474 - - conserved hypothetical protein [Ricinus communis]
8 Hb_003669_010 0.1543661058 - - PREDICTED: psbP domain-containing protein 5, chloroplastic [Populus euphratica]
9 Hb_001951_130 0.1600692634 - - PREDICTED: coatomer subunit zeta-1-like [Jatropha curcas]
10 Hb_011330_020 0.1635820554 transcription factor TF Family: ARID transcription factor, putative [Ricinus communis]
11 Hb_000568_060 0.1652081774 - - PREDICTED: uncharacterized protein LOC105650906 [Jatropha curcas]
12 Hb_004176_070 0.1654816341 - - PREDICTED: SPX and EXS domain-containing protein 1-like isoform X1 [Jatropha curcas]
13 Hb_000005_110 0.1656180593 - - histone H2B1 [Hevea brasiliensis]
14 Hb_005054_220 0.167575077 - - PREDICTED: peroxisomal nicotinamide adenine dinucleotide carrier isoform X1 [Jatropha curcas]
15 Hb_004093_020 0.1675781555 - - Calcium-binding EF-hand family protein [Theobroma cacao]
16 Hb_007390_020 0.1689278116 - - PREDICTED: protein FMP32, mitochondrial-like [Populus euphratica]
17 Hb_000975_190 0.1710464272 - - histone H4 [Zea mays]
18 Hb_003758_020 0.1713120754 - - UGTPg34 [Panax ginseng]
19 Hb_000948_200 0.1722072002 - - hypothetical protein CARUB_v10021660mg, partial [Capsella rubella]
20 Hb_002218_030 0.1735218706 - - hypothetical protein B456_007G345200 [Gossypium raimondii]

Gene co-expression network

sample Hb_003020_210 Hb_003020_210 Hb_010368_050 Hb_010368_050 Hb_003020_210--Hb_010368_050 Hb_000123_270 Hb_000123_270 Hb_003020_210--Hb_000123_270 Hb_083380_020 Hb_083380_020 Hb_003020_210--Hb_083380_020 Hb_000539_050 Hb_000539_050 Hb_003020_210--Hb_000539_050 Hb_000215_090 Hb_000215_090 Hb_003020_210--Hb_000215_090 Hb_005000_330 Hb_005000_330 Hb_003020_210--Hb_005000_330 Hb_001951_130 Hb_001951_130 Hb_010368_050--Hb_001951_130 Hb_000127_140 Hb_000127_140 Hb_010368_050--Hb_000127_140 Hb_019181_030 Hb_019181_030 Hb_010368_050--Hb_019181_030 Hb_010407_140 Hb_010407_140 Hb_010368_050--Hb_010407_140 Hb_000392_340 Hb_000392_340 Hb_010368_050--Hb_000392_340 Hb_010368_050--Hb_083380_020 Hb_000123_270--Hb_005000_330 Hb_000948_200 Hb_000948_200 Hb_000123_270--Hb_000948_200 Hb_003758_020 Hb_003758_020 Hb_000123_270--Hb_003758_020 Hb_004093_020 Hb_004093_020 Hb_000123_270--Hb_004093_020 Hb_000123_270--Hb_083380_020 Hb_008147_090 Hb_008147_090 Hb_083380_020--Hb_008147_090 Hb_007101_110 Hb_007101_110 Hb_083380_020--Hb_007101_110 Hb_083380_020--Hb_001951_130 Hb_000181_350 Hb_000181_350 Hb_083380_020--Hb_000181_350 Hb_001511_260 Hb_001511_260 Hb_083380_020--Hb_001511_260 Hb_002218_030 Hb_002218_030 Hb_000539_050--Hb_002218_030 Hb_001022_030 Hb_001022_030 Hb_000539_050--Hb_001022_030 Hb_093666_010 Hb_093666_010 Hb_000539_050--Hb_093666_010 Hb_000907_180 Hb_000907_180 Hb_000539_050--Hb_000907_180 Hb_009225_020 Hb_009225_020 Hb_000539_050--Hb_009225_020 Hb_077549_010 Hb_077549_010 Hb_000539_050--Hb_077549_010 Hb_032202_100 Hb_032202_100 Hb_000215_090--Hb_032202_100 Hb_004357_050 Hb_004357_050 Hb_000215_090--Hb_004357_050 Hb_000130_270 Hb_000130_270 Hb_000215_090--Hb_000130_270 Hb_002471_250 Hb_002471_250 Hb_000215_090--Hb_002471_250 Hb_005288_130 Hb_005288_130 Hb_000215_090--Hb_005288_130 Hb_003207_180 Hb_003207_180 Hb_000215_090--Hb_003207_180 Hb_004176_070 Hb_004176_070 Hb_005000_330--Hb_004176_070 Hb_000359_150 Hb_000359_150 Hb_005000_330--Hb_000359_150 Hb_002686_110 Hb_002686_110 Hb_005000_330--Hb_002686_110 Hb_000167_080 Hb_000167_080 Hb_005000_330--Hb_000167_080 Hb_000473_020 Hb_000473_020 Hb_005000_330--Hb_000473_020 Hb_004784_020 Hb_004784_020 Hb_005000_330--Hb_004784_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.232087 0.117085 1.34536 1.30588 0.252231 0.946627
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.847733 0.911517 0.209512 0.345701 0.513395

CAGE analysis