Hb_002218_030

Information

Type -
Description -
Location Contig2218: 41850-45512
Sequence    

Annotation

kegg
ID -
description -
nr
ID KJB46037.1
description hypothetical protein B456_007G345200 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A0D2PJ13
description Gossypium raimondii chromosome 7, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_007G345200 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22976: 19389-45272
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002218_030 0.0 - - hypothetical protein B456_007G345200 [Gossypium raimondii]
2 Hb_000539_050 0.0886590335 - - bile acid:sodium symporter, putative [Ricinus communis]
3 Hb_093666_010 0.0988429668 - - BnaC05g06620D [Brassica napus]
4 Hb_002272_270 0.10356731 - - hypothetical protein POPTR_0013s02780g [Populus trichocarpa]
5 Hb_000110_250 0.1129733892 - - PREDICTED: homologous-pairing protein 2 homolog [Jatropha curcas]
6 Hb_000907_180 0.1163709613 - - PREDICTED: uncharacterized protein LOC105641369 isoform X1 [Jatropha curcas]
7 Hb_113853_010 0.1180274716 - - 50S ribosomal protein L2, putative [Ricinus communis]
8 Hb_157023_020 0.1191523957 - - nucleic acid binding protein, putative [Ricinus communis]
9 Hb_001821_110 0.1201342365 - - PREDICTED: ubiquinol oxidase, mitochondrial [Jatropha curcas]
10 Hb_000840_200 0.1237048837 - - PREDICTED: carbamoyl-phosphate synthase small chain, chloroplastic-like [Jatropha curcas]
11 Hb_000069_720 0.1248141704 - - PREDICTED: exosome complex component RRP41-like [Jatropha curcas]
12 Hb_065525_080 0.1249089187 - - PREDICTED: ubiquitin-conjugating enzyme E2 14 [Populus euphratica]
13 Hb_017987_030 0.1256724718 - - PREDICTED: uncharacterized protein LOC105630796 [Jatropha curcas]
14 Hb_000035_160 0.1281898219 - - PREDICTED: formin-like protein 18 [Jatropha curcas]
15 Hb_015099_030 0.1288986731 - - PREDICTED: uncharacterized protein LOC105649867 [Jatropha curcas]
16 Hb_000699_150 0.1311386299 - - PREDICTED: AT-hook motif nuclear-localized protein 14 [Jatropha curcas]
17 Hb_055619_010 0.1317237294 - - PREDICTED: uncharacterized protein LOC105632456 isoform X2 [Jatropha curcas]
18 Hb_000167_010 0.1319377426 - - conserved hypothetical protein [Ricinus communis]
19 Hb_005288_130 0.1329507985 - - protein with unknown function [Ricinus communis]
20 Hb_021374_030 0.1342316174 - - hypothetical protein RCOM_0351490 [Ricinus communis]

Gene co-expression network

sample Hb_002218_030 Hb_002218_030 Hb_000539_050 Hb_000539_050 Hb_002218_030--Hb_000539_050 Hb_093666_010 Hb_093666_010 Hb_002218_030--Hb_093666_010 Hb_002272_270 Hb_002272_270 Hb_002218_030--Hb_002272_270 Hb_000110_250 Hb_000110_250 Hb_002218_030--Hb_000110_250 Hb_000907_180 Hb_000907_180 Hb_002218_030--Hb_000907_180 Hb_113853_010 Hb_113853_010 Hb_002218_030--Hb_113853_010 Hb_001022_030 Hb_001022_030 Hb_000539_050--Hb_001022_030 Hb_000539_050--Hb_093666_010 Hb_000539_050--Hb_000907_180 Hb_009225_020 Hb_009225_020 Hb_000539_050--Hb_009225_020 Hb_077549_010 Hb_077549_010 Hb_000539_050--Hb_077549_010 Hb_065525_080 Hb_065525_080 Hb_093666_010--Hb_065525_080 Hb_093666_010--Hb_113853_010 Hb_030414_040 Hb_030414_040 Hb_093666_010--Hb_030414_040 Hb_001623_270 Hb_001623_270 Hb_093666_010--Hb_001623_270 Hb_021374_030 Hb_021374_030 Hb_093666_010--Hb_021374_030 Hb_183433_010 Hb_183433_010 Hb_093666_010--Hb_183433_010 Hb_000840_200 Hb_000840_200 Hb_002272_270--Hb_000840_200 Hb_000179_270 Hb_000179_270 Hb_002272_270--Hb_000179_270 Hb_000087_070 Hb_000087_070 Hb_002272_270--Hb_000087_070 Hb_015675_040 Hb_015675_040 Hb_002272_270--Hb_015675_040 Hb_005288_130 Hb_005288_130 Hb_002272_270--Hb_005288_130 Hb_157023_020 Hb_157023_020 Hb_002272_270--Hb_157023_020 Hb_000069_720 Hb_000069_720 Hb_000110_250--Hb_000069_720 Hb_003678_020 Hb_003678_020 Hb_000110_250--Hb_003678_020 Hb_189216_020 Hb_189216_020 Hb_000110_250--Hb_189216_020 Hb_011330_020 Hb_011330_020 Hb_000110_250--Hb_011330_020 Hb_007894_060 Hb_007894_060 Hb_000110_250--Hb_007894_060 Hb_007827_010 Hb_007827_010 Hb_000110_250--Hb_007827_010 Hb_003266_030 Hb_003266_030 Hb_000907_180--Hb_003266_030 Hb_004452_120 Hb_004452_120 Hb_000907_180--Hb_004452_120 Hb_001882_010 Hb_001882_010 Hb_000907_180--Hb_001882_010 Hb_005127_030 Hb_005127_030 Hb_000907_180--Hb_005127_030 Hb_000907_180--Hb_001022_030 Hb_012150_030 Hb_012150_030 Hb_000907_180--Hb_012150_030 Hb_113853_010--Hb_065525_080 Hb_002876_300 Hb_002876_300 Hb_113853_010--Hb_002876_300 Hb_005494_010 Hb_005494_010 Hb_113853_010--Hb_005494_010 Hb_009476_130 Hb_009476_130 Hb_113853_010--Hb_009476_130 Hb_113853_010--Hb_021374_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.6924 3.60569 8.67398 7.26559 2.21413 6.79707
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.94834 6.45256 1.76599 5.92293 7.60131

CAGE analysis