Hb_126648_010

Information

Type -
Description -
Location Contig126648: 3294-5631
Sequence    

Annotation

kegg
ID mdm:103428441
description vacuolar protein-sorting-associated protein 33 homolog
nr
ID XP_012078446.1
description PREDICTED: vacuolar protein-sorting-associated protein 33 homolog [Jatropha curcas]
swissprot
ID Q94KJ7
description Vacuolar protein-sorting-associated protein 33 homolog OS=Arabidopsis thaliana GN=VPS33 PE=1 SV=1
trembl
ID A0A067KC36
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13133 PE=4 SV=1
Gene Ontology
ID GO:0006810
description vacuolar protein-sorting-associated protein 33 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_126648_010 0.0 - - PREDICTED: vacuolar protein-sorting-associated protein 33 homolog [Jatropha curcas]
2 Hb_002321_040 0.1464709452 - - hypothetical protein POPTR_0019s14030g [Populus trichocarpa]
3 Hb_011609_040 0.1641397471 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 40 [Jatropha curcas]
4 Hb_005048_110 0.1890123356 - - -
5 Hb_013834_010 0.1910464861 - - PREDICTED: kinesin-like protein NACK2 [Jatropha curcas]
6 Hb_002325_030 0.1971609611 - - PREDICTED: glucan endo-1,3-beta-glucosidase 2 [Jatropha curcas]
7 Hb_000692_210 0.2046632236 - - PREDICTED: 24-methylenesterol C-methyltransferase 2 [Jatropha curcas]
8 Hb_000640_050 0.2104183282 - - DNA replication licensing factor MCM7, putative [Ricinus communis]
9 Hb_002600_130 0.2141986741 - - PREDICTED: uncharacterized protein LOC105646808 [Jatropha curcas]
10 Hb_000521_180 0.2178248774 - - PREDICTED: uncharacterized protein LOC105650335 [Jatropha curcas]
11 Hb_000959_190 0.222536166 - - PREDICTED: crossover junction endonuclease EME1B-like [Jatropha curcas]
12 Hb_000320_050 0.2249951914 - - bcr-associated protein, bap, putative [Ricinus communis]
13 Hb_006775_070 0.2258675748 - - zinc finger protein, putative [Ricinus communis]
14 Hb_000009_610 0.2266272511 - - PREDICTED: uncharacterized protein LOC105639638 isoform X2 [Jatropha curcas]
15 Hb_001329_190 0.2268424855 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
16 Hb_002518_200 0.2315177085 - - Proliferating cell nuclear antigen [Theobroma cacao]
17 Hb_021495_010 0.231935559 - - conserved hypothetical protein [Ricinus communis]
18 Hb_011485_030 0.2325255719 - - PREDICTED: uncharacterized protein LOC105647814 [Jatropha curcas]
19 Hb_000134_030 0.2339388135 - - PREDICTED: sister chromatid cohesion 1 protein 3-like [Jatropha curcas]
20 Hb_005901_030 0.2350928683 - - PREDICTED: phragmoplast orienting kinesin 2 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_126648_010 Hb_126648_010 Hb_002321_040 Hb_002321_040 Hb_126648_010--Hb_002321_040 Hb_011609_040 Hb_011609_040 Hb_126648_010--Hb_011609_040 Hb_005048_110 Hb_005048_110 Hb_126648_010--Hb_005048_110 Hb_013834_010 Hb_013834_010 Hb_126648_010--Hb_013834_010 Hb_002325_030 Hb_002325_030 Hb_126648_010--Hb_002325_030 Hb_000692_210 Hb_000692_210 Hb_126648_010--Hb_000692_210 Hb_002321_040--Hb_011609_040 Hb_002321_040--Hb_005048_110 Hb_002321_040--Hb_013834_010 Hb_000640_050 Hb_000640_050 Hb_002321_040--Hb_000640_050 Hb_000320_050 Hb_000320_050 Hb_002321_040--Hb_000320_050 Hb_011609_040--Hb_013834_010 Hb_000959_190 Hb_000959_190 Hb_011609_040--Hb_000959_190 Hb_002600_130 Hb_002600_130 Hb_011609_040--Hb_002600_130 Hb_011609_040--Hb_000640_050 Hb_005048_110--Hb_011609_040 Hb_001329_170 Hb_001329_170 Hb_005048_110--Hb_001329_170 Hb_001329_190 Hb_001329_190 Hb_005048_110--Hb_001329_190 Hb_002397_060 Hb_002397_060 Hb_005048_110--Hb_002397_060 Hb_002400_050 Hb_002400_050 Hb_013834_010--Hb_002400_050 Hb_001135_110 Hb_001135_110 Hb_013834_010--Hb_001135_110 Hb_013834_010--Hb_000959_190 Hb_004920_050 Hb_004920_050 Hb_013834_010--Hb_004920_050 Hb_013344_010 Hb_013344_010 Hb_013834_010--Hb_013344_010 Hb_000732_030 Hb_000732_030 Hb_013834_010--Hb_000732_030 Hb_011485_030 Hb_011485_030 Hb_002325_030--Hb_011485_030 Hb_002325_030--Hb_004920_050 Hb_000397_140 Hb_000397_140 Hb_002325_030--Hb_000397_140 Hb_002325_030--Hb_013834_010 Hb_008250_020 Hb_008250_020 Hb_002325_030--Hb_008250_020 Hb_002518_200 Hb_002518_200 Hb_000692_210--Hb_002518_200 Hb_004837_220 Hb_004837_220 Hb_000692_210--Hb_004837_220 Hb_003747_050 Hb_003747_050 Hb_000692_210--Hb_003747_050 Hb_000003_740 Hb_000003_740 Hb_000692_210--Hb_000003_740 Hb_005000_140 Hb_005000_140 Hb_000692_210--Hb_005000_140 Hb_080147_020 Hb_080147_020 Hb_000692_210--Hb_080147_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.797914 0.756632 3.40241 1.14216 0.550533 0.32508
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.121077 0.380528 0 0.668634 0

CAGE analysis