Hb_011609_040

Information

Type transcription factor
Description TF Family: LOB
Location Contig11609: 35099-36283
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa009213mg
description hypothetical protein
nr
ID XP_012077976.1
description PREDICTED: LOB domain-containing protein 40 [Jatropha curcas]
swissprot
ID Q9M886
description LOB domain-containing protein 41 OS=Arabidopsis thaliana GN=LBD41 PE=2 SV=1
trembl
ID A0A067KMA8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12980 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04948: 35216-36506
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011609_040 0.0 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 40 [Jatropha curcas]
2 Hb_126648_010 0.1641397471 - - PREDICTED: vacuolar protein-sorting-associated protein 33 homolog [Jatropha curcas]
3 Hb_002321_040 0.1860284559 - - hypothetical protein POPTR_0019s14030g [Populus trichocarpa]
4 Hb_013834_010 0.1865587073 - - PREDICTED: kinesin-like protein NACK2 [Jatropha curcas]
5 Hb_000959_190 0.1894757662 - - PREDICTED: crossover junction endonuclease EME1B-like [Jatropha curcas]
6 Hb_002600_130 0.1901162668 - - PREDICTED: uncharacterized protein LOC105646808 [Jatropha curcas]
7 Hb_000640_050 0.1946565556 - - DNA replication licensing factor MCM7, putative [Ricinus communis]
8 Hb_000320_050 0.1950226355 - - bcr-associated protein, bap, putative [Ricinus communis]
9 Hb_000438_090 0.1991574295 - - PREDICTED: mini-chromosome maintenance complex-binding protein [Jatropha curcas]
10 Hb_000009_610 0.1996063349 - - PREDICTED: uncharacterized protein LOC105639638 isoform X2 [Jatropha curcas]
11 Hb_131864_030 0.2008497947 transcription factor TF Family: C2H2 transcription factor, putative [Ricinus communis]
12 Hb_000122_010 0.2040161393 - - amino acid transporter, putative [Ricinus communis]
13 Hb_003529_180 0.2065466471 - - hypothetical protein JCGZ_00222 [Jatropha curcas]
14 Hb_001329_190 0.2083359905 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
15 Hb_032202_130 0.2102896798 - - PREDICTED: uncharacterized protein LOC105643062 [Jatropha curcas]
16 Hb_005048_110 0.2108159497 - - -
17 Hb_006775_070 0.2121101669 - - zinc finger protein, putative [Ricinus communis]
18 Hb_000668_060 0.2158344215 - - Pollen-specific protein C13 precursor, putative [Ricinus communis]
19 Hb_003305_030 0.2163819686 - - -
20 Hb_000120_350 0.2167391295 - - PREDICTED: uncharacterized protein LOC104422872 isoform X1 [Eucalyptus grandis]

Gene co-expression network

sample Hb_011609_040 Hb_011609_040 Hb_126648_010 Hb_126648_010 Hb_011609_040--Hb_126648_010 Hb_002321_040 Hb_002321_040 Hb_011609_040--Hb_002321_040 Hb_013834_010 Hb_013834_010 Hb_011609_040--Hb_013834_010 Hb_000959_190 Hb_000959_190 Hb_011609_040--Hb_000959_190 Hb_002600_130 Hb_002600_130 Hb_011609_040--Hb_002600_130 Hb_000640_050 Hb_000640_050 Hb_011609_040--Hb_000640_050 Hb_126648_010--Hb_002321_040 Hb_005048_110 Hb_005048_110 Hb_126648_010--Hb_005048_110 Hb_126648_010--Hb_013834_010 Hb_002325_030 Hb_002325_030 Hb_126648_010--Hb_002325_030 Hb_000692_210 Hb_000692_210 Hb_126648_010--Hb_000692_210 Hb_002321_040--Hb_005048_110 Hb_002321_040--Hb_013834_010 Hb_002321_040--Hb_000640_050 Hb_000320_050 Hb_000320_050 Hb_002321_040--Hb_000320_050 Hb_002400_050 Hb_002400_050 Hb_013834_010--Hb_002400_050 Hb_001135_110 Hb_001135_110 Hb_013834_010--Hb_001135_110 Hb_013834_010--Hb_000959_190 Hb_004920_050 Hb_004920_050 Hb_013834_010--Hb_004920_050 Hb_013344_010 Hb_013344_010 Hb_013834_010--Hb_013344_010 Hb_000732_030 Hb_000732_030 Hb_013834_010--Hb_000732_030 Hb_000959_190--Hb_000732_030 Hb_001123_110 Hb_001123_110 Hb_000959_190--Hb_001123_110 Hb_000120_350 Hb_000120_350 Hb_000959_190--Hb_000120_350 Hb_000008_390 Hb_000008_390 Hb_000959_190--Hb_000008_390 Hb_000959_190--Hb_000640_050 Hb_004957_020 Hb_004957_020 Hb_000959_190--Hb_004957_020 Hb_003529_180 Hb_003529_180 Hb_002600_130--Hb_003529_180 Hb_124951_010 Hb_124951_010 Hb_002600_130--Hb_124951_010 Hb_003747_050 Hb_003747_050 Hb_002600_130--Hb_003747_050 Hb_000009_220 Hb_000009_220 Hb_002600_130--Hb_000009_220 Hb_011609_010 Hb_011609_010 Hb_002600_130--Hb_011609_010 Hb_004725_030 Hb_004725_030 Hb_002600_130--Hb_004725_030 Hb_021495_010 Hb_021495_010 Hb_000640_050--Hb_021495_010 Hb_010998_050 Hb_010998_050 Hb_000640_050--Hb_010998_050 Hb_000640_050--Hb_004957_020 Hb_005901_030 Hb_005901_030 Hb_000640_050--Hb_005901_030 Hb_003874_010 Hb_003874_010 Hb_000640_050--Hb_003874_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
65.485 121.082 430.001 209.06 129.888 66.9218
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.0318 54.8335 16.7931 41.8913 1.61741

CAGE analysis