Hb_002325_030

Information

Type -
Description -
Location Contig2325: 16788-21009
Sequence    

Annotation

kegg
ID rcu:RCOM_0372050
description Glucan endo-1,3-beta-glucosidase precursor, putative (EC:3.2.1.39)
nr
ID XP_012086410.1
description PREDICTED: glucan endo-1,3-beta-glucosidase 2 [Jatropha curcas]
swissprot
ID Q9C7U5
description Glucan endo-1,3-beta-glucosidase 2 OS=Arabidopsis thaliana GN=At1g66250 PE=1 SV=2
trembl
ID B9T103
description Glucan endo-1,3-beta-glucosidase, putative OS=Ricinus communis GN=RCOM_0372050 PE=3 SV=1
Gene Ontology
ID GO:0046658
description glucan endo- -beta-glucosidase 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24438: 16817-20953
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002325_030 0.0 - - PREDICTED: glucan endo-1,3-beta-glucosidase 2 [Jatropha curcas]
2 Hb_011485_030 0.1669675211 - - PREDICTED: uncharacterized protein LOC105647814 [Jatropha curcas]
3 Hb_004920_050 0.1765941213 - - DNA replication licensing factor MCM7, putative [Ricinus communis]
4 Hb_000397_140 0.1903889642 transcription factor TF Family: PLATZ hypothetical protein JCGZ_16980 [Jatropha curcas]
5 Hb_013834_010 0.1913136118 - - PREDICTED: kinesin-like protein NACK2 [Jatropha curcas]
6 Hb_126648_010 0.1971609611 - - PREDICTED: vacuolar protein-sorting-associated protein 33 homolog [Jatropha curcas]
7 Hb_008250_020 0.197506691 - - PREDICTED: U-box domain-containing protein 15-like isoform X1 [Jatropha curcas]
8 Hb_000260_610 0.1986346177 - - PREDICTED: cell division cycle 20.1, cofactor of APC complex-like [Jatropha curcas]
9 Hb_000181_270 0.1989827518 - - ATP binding protein, putative [Ricinus communis]
10 Hb_013344_010 0.2016975834 - - PREDICTED: microtubule-associated protein TORTIFOLIA1 [Jatropha curcas]
11 Hb_000288_090 0.2060216007 - - unnamed protein product [Vitis vinifera]
12 Hb_000521_180 0.2089676453 - - PREDICTED: uncharacterized protein LOC105650335 [Jatropha curcas]
13 Hb_001386_100 0.2174576093 transcription factor TF Family: M-type PREDICTED: MADS-box transcription factor PHERES 1-like [Jatropha curcas]
14 Hb_002400_050 0.2223936775 - - PREDICTED: uncharacterized protein LOC105637632 isoform X1 [Jatropha curcas]
15 Hb_000003_740 0.2224358405 - - PREDICTED: uncharacterized protein LOC105631539 [Jatropha curcas]
16 Hb_001328_070 0.2227259836 - - PREDICTED: glucan endo-1,3-beta-glucosidase 13 [Jatropha curcas]
17 Hb_000692_210 0.2235578845 - - PREDICTED: 24-methylenesterol C-methyltransferase 2 [Jatropha curcas]
18 Hb_002518_200 0.2245544019 - - Proliferating cell nuclear antigen [Theobroma cacao]
19 Hb_000077_440 0.229563645 - - PREDICTED: ELMO domain-containing protein A isoform X1 [Jatropha curcas]
20 Hb_001536_020 0.2309249807 transcription factor TF Family: GRF PREDICTED: uncharacterized protein LOC105631006 [Jatropha curcas]

Gene co-expression network

sample Hb_002325_030 Hb_002325_030 Hb_011485_030 Hb_011485_030 Hb_002325_030--Hb_011485_030 Hb_004920_050 Hb_004920_050 Hb_002325_030--Hb_004920_050 Hb_000397_140 Hb_000397_140 Hb_002325_030--Hb_000397_140 Hb_013834_010 Hb_013834_010 Hb_002325_030--Hb_013834_010 Hb_126648_010 Hb_126648_010 Hb_002325_030--Hb_126648_010 Hb_008250_020 Hb_008250_020 Hb_002325_030--Hb_008250_020 Hb_000181_270 Hb_000181_270 Hb_011485_030--Hb_000181_270 Hb_011485_030--Hb_004920_050 Hb_000288_090 Hb_000288_090 Hb_011485_030--Hb_000288_090 Hb_005901_030 Hb_005901_030 Hb_011485_030--Hb_005901_030 Hb_000566_130 Hb_000566_130 Hb_011485_030--Hb_000566_130 Hb_002518_200 Hb_002518_200 Hb_011485_030--Hb_002518_200 Hb_004920_050--Hb_000181_270 Hb_000077_110 Hb_000077_110 Hb_004920_050--Hb_000077_110 Hb_000890_020 Hb_000890_020 Hb_004920_050--Hb_000890_020 Hb_004920_050--Hb_002518_200 Hb_004920_050--Hb_000566_130 Hb_001754_100 Hb_001754_100 Hb_000397_140--Hb_001754_100 Hb_007894_100 Hb_007894_100 Hb_000397_140--Hb_007894_100 Hb_000397_170 Hb_000397_170 Hb_000397_140--Hb_000397_170 Hb_150745_010 Hb_150745_010 Hb_000397_140--Hb_150745_010 Hb_003226_060 Hb_003226_060 Hb_000397_140--Hb_003226_060 Hb_002874_120 Hb_002874_120 Hb_000397_140--Hb_002874_120 Hb_002400_050 Hb_002400_050 Hb_013834_010--Hb_002400_050 Hb_001135_110 Hb_001135_110 Hb_013834_010--Hb_001135_110 Hb_000959_190 Hb_000959_190 Hb_013834_010--Hb_000959_190 Hb_013834_010--Hb_004920_050 Hb_013344_010 Hb_013344_010 Hb_013834_010--Hb_013344_010 Hb_000732_030 Hb_000732_030 Hb_013834_010--Hb_000732_030 Hb_002321_040 Hb_002321_040 Hb_126648_010--Hb_002321_040 Hb_011609_040 Hb_011609_040 Hb_126648_010--Hb_011609_040 Hb_005048_110 Hb_005048_110 Hb_126648_010--Hb_005048_110 Hb_126648_010--Hb_013834_010 Hb_000692_210 Hb_000692_210 Hb_126648_010--Hb_000692_210 Hb_006153_010 Hb_006153_010 Hb_008250_020--Hb_006153_010 Hb_002897_010 Hb_002897_010 Hb_008250_020--Hb_002897_010 Hb_001235_160 Hb_001235_160 Hb_008250_020--Hb_001235_160 Hb_000395_120 Hb_000395_120 Hb_008250_020--Hb_000395_120 Hb_000260_610 Hb_000260_610 Hb_008250_020--Hb_000260_610 Hb_002463_050 Hb_002463_050 Hb_008250_020--Hb_002463_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.9791 9.00797 58.8159 21.7979 3.38785 3.83375
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.603574 0.118723 0.224512 13.7662 0.917199

CAGE analysis