Hb_000397_140

Information

Type transcription factor
Description TF Family: PLATZ
Location Contig397: 250566-251830
Sequence    

Annotation

kegg
ID rcu:RCOM_1372310
description zinc ion binding protein, putative
nr
ID KDP30198.1
description hypothetical protein JCGZ_16980 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K5B9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16980 PE=4 SV=1
Gene Ontology
ID GO:0005622
description zinc-binding family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39611: 250915-251617
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000397_140 0.0 transcription factor TF Family: PLATZ hypothetical protein JCGZ_16980 [Jatropha curcas]
2 Hb_001754_100 0.1563146645 - - PREDICTED: peroxidase 5-like [Jatropha curcas]
3 Hb_007894_100 0.1580910583 - - PREDICTED: uncharacterized protein LOC105632952 [Jatropha curcas]
4 Hb_000397_170 0.170088864 - - conserved hypothetical protein [Ricinus communis]
5 Hb_150745_010 0.1758910663 - - hypothetical protein JCGZ_17337 [Jatropha curcas]
6 Hb_003226_060 0.1765840299 - - Pectinesterase-2 precursor, putative [Ricinus communis]
7 Hb_002874_120 0.1792088415 - - PREDICTED: calmodulin-like protein 7 [Jatropha curcas]
8 Hb_011849_030 0.181980453 - - conserved hypothetical protein [Ricinus communis]
9 Hb_002325_030 0.1903889642 - - PREDICTED: glucan endo-1,3-beta-glucosidase 2 [Jatropha curcas]
10 Hb_000261_340 0.1919555444 - - PREDICTED: PLASMODESMATA CALLOSE-BINDING PROTEIN 3 [Jatropha curcas]
11 Hb_001649_050 0.1943064515 - - Shaggy-like kinase 13 isoform 1 [Theobroma cacao]
12 Hb_000574_180 0.1952194831 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180 [Jatropha curcas]
13 Hb_007558_110 0.1957695865 - - PREDICTED: uncharacterized protein LOC105649093 [Jatropha curcas]
14 Hb_005116_030 0.1965838494 - - PREDICTED: uncharacterized protein LOC105650003 isoform X2 [Jatropha curcas]
15 Hb_001005_170 0.2007608689 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase RPK2 [Jatropha curcas]
16 Hb_005306_030 0.2009928056 - - PREDICTED: protein IQ-DOMAIN 1 [Jatropha curcas]
17 Hb_000413_220 0.2031217294 - - PREDICTED: kinesin-1 [Jatropha curcas]
18 Hb_000563_180 0.2036393305 - - PREDICTED: J protein JJJ2 [Jatropha curcas]
19 Hb_000656_120 0.2043778247 transcription factor TF Family: Tify JAZ2 [Hevea brasiliensis]
20 Hb_033152_060 0.2048518103 - - PREDICTED: phragmoplast orienting kinesin 2 [Jatropha curcas]

Gene co-expression network

sample Hb_000397_140 Hb_000397_140 Hb_001754_100 Hb_001754_100 Hb_000397_140--Hb_001754_100 Hb_007894_100 Hb_007894_100 Hb_000397_140--Hb_007894_100 Hb_000397_170 Hb_000397_170 Hb_000397_140--Hb_000397_170 Hb_150745_010 Hb_150745_010 Hb_000397_140--Hb_150745_010 Hb_003226_060 Hb_003226_060 Hb_000397_140--Hb_003226_060 Hb_002874_120 Hb_002874_120 Hb_000397_140--Hb_002874_120 Hb_001754_100--Hb_000397_170 Hb_001754_100--Hb_150745_010 Hb_001754_100--Hb_003226_060 Hb_000574_180 Hb_000574_180 Hb_001754_100--Hb_000574_180 Hb_000413_220 Hb_000413_220 Hb_001754_100--Hb_000413_220 Hb_000256_170 Hb_000256_170 Hb_001754_100--Hb_000256_170 Hb_007894_100--Hb_000256_170 Hb_007894_100--Hb_000574_180 Hb_000193_060 Hb_000193_060 Hb_007894_100--Hb_000193_060 Hb_006060_010 Hb_006060_010 Hb_007894_100--Hb_006060_010 Hb_000261_340 Hb_000261_340 Hb_007894_100--Hb_000261_340 Hb_000397_170--Hb_003226_060 Hb_005599_010 Hb_005599_010 Hb_000397_170--Hb_005599_010 Hb_000397_170--Hb_000574_180 Hb_000397_170--Hb_150745_010 Hb_000397_170--Hb_000256_170 Hb_150745_010--Hb_000413_220 Hb_150745_010--Hb_000574_180 Hb_000483_050 Hb_000483_050 Hb_150745_010--Hb_000483_050 Hb_000574_270 Hb_000574_270 Hb_150745_010--Hb_000574_270 Hb_003226_060--Hb_005599_010 Hb_004154_010 Hb_004154_010 Hb_003226_060--Hb_004154_010 Hb_003226_060--Hb_000574_180 Hb_003226_060--Hb_150745_010 Hb_000343_020 Hb_000343_020 Hb_002874_120--Hb_000343_020 Hb_011849_030 Hb_011849_030 Hb_002874_120--Hb_011849_030 Hb_002918_220 Hb_002918_220 Hb_002874_120--Hb_002918_220 Hb_005568_140 Hb_005568_140 Hb_002874_120--Hb_005568_140 Hb_027337_010 Hb_027337_010 Hb_002874_120--Hb_027337_010 Hb_000200_270 Hb_000200_270 Hb_002874_120--Hb_000200_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.214489 0.44036 3.34846 1.1156 0.0259046 0.0244029
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.625424 0

CAGE analysis