Hb_000261_340

Information

Type -
Description -
Location Contig261: 298488-301603
Sequence    

Annotation

kegg
ID mdm:103443473
description glucan endo-1,3-beta-glucosidase-like protein 3
nr
ID XP_012071128.1
description PREDICTED: PLASMODESMATA CALLOSE-BINDING PROTEIN 3 [Jatropha curcas]
swissprot
ID Q9FZ86
description PLASMODESMATA CALLOSE-BINDING PROTEIN 3 OS=Arabidopsis thaliana GN=PDCB3 PE=1 SV=1
trembl
ID A0A067KWK7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01120 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27294: 298735-301680
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000261_340 0.0 - - PREDICTED: PLASMODESMATA CALLOSE-BINDING PROTEIN 3 [Jatropha curcas]
2 Hb_000397_170 0.1415614565 - - conserved hypothetical protein [Ricinus communis]
3 Hb_003226_060 0.1424333134 - - Pectinesterase-2 precursor, putative [Ricinus communis]
4 Hb_000574_180 0.1546573871 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180 [Jatropha curcas]
5 Hb_000256_170 0.1594627105 - - PREDICTED: uncharacterized protein LOC105638320 [Jatropha curcas]
6 Hb_005599_010 0.1614822332 - - Protein MLO, putative [Ricinus communis]
7 Hb_007894_100 0.1685408832 - - PREDICTED: uncharacterized protein LOC105632952 [Jatropha curcas]
8 Hb_001754_100 0.1716874308 - - PREDICTED: peroxidase 5-like [Jatropha curcas]
9 Hb_000413_220 0.1740162185 - - PREDICTED: kinesin-1 [Jatropha curcas]
10 Hb_150745_010 0.1782537147 - - hypothetical protein JCGZ_17337 [Jatropha curcas]
11 Hb_003119_040 0.1802917225 - - PREDICTED: classical arabinogalactan protein 1-like [Populus euphratica]
12 Hb_004154_010 0.1816963666 - - Rop guanine nucleotide exchange factor, putative [Ricinus communis]
13 Hb_002362_010 0.1888461143 - - hypothetical protein JCGZ_12328 [Jatropha curcas]
14 Hb_006060_010 0.1890434592 - - PREDICTED: cyclin-A2-2-like [Jatropha curcas]
15 Hb_002540_100 0.1892603736 - - PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At1g66830 [Jatropha curcas]
16 Hb_144649_010 0.1896835002 - - 60S ribosomal protein L34A [Hevea brasiliensis]
17 Hb_000193_060 0.1912787696 - - PREDICTED: F-box protein At4g35930 [Jatropha curcas]
18 Hb_000397_140 0.1919555444 transcription factor TF Family: PLATZ hypothetical protein JCGZ_16980 [Jatropha curcas]
19 Hb_000483_050 0.1920626061 - - PREDICTED: vacuolar amino acid transporter 1-like [Jatropha curcas]
20 Hb_000365_110 0.1931077708 transcription factor TF Family: GRAS PREDICTED: protein SCARECROW [Jatropha curcas]

Gene co-expression network

sample Hb_000261_340 Hb_000261_340 Hb_000397_170 Hb_000397_170 Hb_000261_340--Hb_000397_170 Hb_003226_060 Hb_003226_060 Hb_000261_340--Hb_003226_060 Hb_000574_180 Hb_000574_180 Hb_000261_340--Hb_000574_180 Hb_000256_170 Hb_000256_170 Hb_000261_340--Hb_000256_170 Hb_005599_010 Hb_005599_010 Hb_000261_340--Hb_005599_010 Hb_007894_100 Hb_007894_100 Hb_000261_340--Hb_007894_100 Hb_000397_170--Hb_003226_060 Hb_001754_100 Hb_001754_100 Hb_000397_170--Hb_001754_100 Hb_000397_170--Hb_005599_010 Hb_000397_170--Hb_000574_180 Hb_150745_010 Hb_150745_010 Hb_000397_170--Hb_150745_010 Hb_000397_170--Hb_000256_170 Hb_003226_060--Hb_005599_010 Hb_003226_060--Hb_001754_100 Hb_004154_010 Hb_004154_010 Hb_003226_060--Hb_004154_010 Hb_003226_060--Hb_000574_180 Hb_003226_060--Hb_150745_010 Hb_000413_220 Hb_000413_220 Hb_000574_180--Hb_000413_220 Hb_000574_180--Hb_000256_170 Hb_000739_250 Hb_000739_250 Hb_000574_180--Hb_000739_250 Hb_000668_190 Hb_000668_190 Hb_000574_180--Hb_000668_190 Hb_000574_180--Hb_001754_100 Hb_000256_170--Hb_000413_220 Hb_000256_170--Hb_000739_250 Hb_000331_020 Hb_000331_020 Hb_000256_170--Hb_000331_020 Hb_000256_170--Hb_000668_190 Hb_005599_010--Hb_004154_010 Hb_002540_100 Hb_002540_100 Hb_005599_010--Hb_002540_100 Hb_014549_010 Hb_014549_010 Hb_005599_010--Hb_014549_010 Hb_006197_010 Hb_006197_010 Hb_005599_010--Hb_006197_010 Hb_007894_100--Hb_000256_170 Hb_007894_100--Hb_000574_180 Hb_000397_140 Hb_000397_140 Hb_007894_100--Hb_000397_140 Hb_000193_060 Hb_000193_060 Hb_007894_100--Hb_000193_060 Hb_006060_010 Hb_006060_010 Hb_007894_100--Hb_006060_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.571877 2.97304 1.23735 0.141437 0.0486115
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.269262 0

CAGE analysis