Hb_002321_040

Information

Type -
Description -
Location Contig2321: 142225-142488
Sequence    

Annotation

kegg
ID pop:POPTR_0019s14030g
description hypothetical protein
nr
ID XP_006371642.1
description hypothetical protein POPTR_0019s14030g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID U5FGM0
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0019s14030g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002321_040 0.0 - - hypothetical protein POPTR_0019s14030g [Populus trichocarpa]
2 Hb_126648_010 0.1464709452 - - PREDICTED: vacuolar protein-sorting-associated protein 33 homolog [Jatropha curcas]
3 Hb_011609_040 0.1860284559 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 40 [Jatropha curcas]
4 Hb_005048_110 0.191368498 - - -
5 Hb_013834_010 0.2019478195 - - PREDICTED: kinesin-like protein NACK2 [Jatropha curcas]
6 Hb_000640_050 0.2274262245 - - DNA replication licensing factor MCM7, putative [Ricinus communis]
7 Hb_000320_050 0.2280292142 - - bcr-associated protein, bap, putative [Ricinus communis]
8 Hb_005162_130 0.2399571224 - - PREDICTED: uncharacterized protein LOC105648433 isoform X2 [Jatropha curcas]
9 Hb_002325_030 0.2411484257 - - PREDICTED: glucan endo-1,3-beta-glucosidase 2 [Jatropha curcas]
10 Hb_001329_170 0.244558476 - - Chlorophyll a-b binding protein, chloroplastic [Aegilops tauschii]
11 Hb_001454_070 0.2446515595 - - Uveal autoantigen with coiled-coil domains and ankyrin repeats isoform 1 [Theobroma cacao]
12 Hb_000345_410 0.24747109 - - PREDICTED: kinesin-like protein KIFC3 [Jatropha curcas]
13 Hb_000566_130 0.2477840585 - - PREDICTED: probable DNA primase large subunit isoform X2 [Jatropha curcas]
14 Hb_005901_030 0.2508961641 - - PREDICTED: phragmoplast orienting kinesin 2 isoform X1 [Jatropha curcas]
15 Hb_000260_650 0.2519762735 - - PREDICTED: protein PFC0760c [Jatropha curcas]
16 Hb_000808_120 0.2521523855 - - -
17 Hb_000009_610 0.2525404051 - - PREDICTED: uncharacterized protein LOC105639638 isoform X2 [Jatropha curcas]
18 Hb_000438_090 0.2530605667 - - PREDICTED: mini-chromosome maintenance complex-binding protein [Jatropha curcas]
19 Hb_000668_060 0.2549030899 - - Pollen-specific protein C13 precursor, putative [Ricinus communis]
20 Hb_000959_190 0.2569929606 - - PREDICTED: crossover junction endonuclease EME1B-like [Jatropha curcas]

Gene co-expression network

sample Hb_002321_040 Hb_002321_040 Hb_126648_010 Hb_126648_010 Hb_002321_040--Hb_126648_010 Hb_011609_040 Hb_011609_040 Hb_002321_040--Hb_011609_040 Hb_005048_110 Hb_005048_110 Hb_002321_040--Hb_005048_110 Hb_013834_010 Hb_013834_010 Hb_002321_040--Hb_013834_010 Hb_000640_050 Hb_000640_050 Hb_002321_040--Hb_000640_050 Hb_000320_050 Hb_000320_050 Hb_002321_040--Hb_000320_050 Hb_126648_010--Hb_011609_040 Hb_126648_010--Hb_005048_110 Hb_126648_010--Hb_013834_010 Hb_002325_030 Hb_002325_030 Hb_126648_010--Hb_002325_030 Hb_000692_210 Hb_000692_210 Hb_126648_010--Hb_000692_210 Hb_011609_040--Hb_013834_010 Hb_000959_190 Hb_000959_190 Hb_011609_040--Hb_000959_190 Hb_002600_130 Hb_002600_130 Hb_011609_040--Hb_002600_130 Hb_011609_040--Hb_000640_050 Hb_005048_110--Hb_011609_040 Hb_001329_170 Hb_001329_170 Hb_005048_110--Hb_001329_170 Hb_001329_190 Hb_001329_190 Hb_005048_110--Hb_001329_190 Hb_002397_060 Hb_002397_060 Hb_005048_110--Hb_002397_060 Hb_002400_050 Hb_002400_050 Hb_013834_010--Hb_002400_050 Hb_001135_110 Hb_001135_110 Hb_013834_010--Hb_001135_110 Hb_013834_010--Hb_000959_190 Hb_004920_050 Hb_004920_050 Hb_013834_010--Hb_004920_050 Hb_013344_010 Hb_013344_010 Hb_013834_010--Hb_013344_010 Hb_000732_030 Hb_000732_030 Hb_013834_010--Hb_000732_030 Hb_021495_010 Hb_021495_010 Hb_000640_050--Hb_021495_010 Hb_000640_050--Hb_000959_190 Hb_010998_050 Hb_010998_050 Hb_000640_050--Hb_010998_050 Hb_004957_020 Hb_004957_020 Hb_000640_050--Hb_004957_020 Hb_005901_030 Hb_005901_030 Hb_000640_050--Hb_005901_030 Hb_003874_010 Hb_003874_010 Hb_000640_050--Hb_003874_010 Hb_000668_060 Hb_000668_060 Hb_000320_050--Hb_000668_060 Hb_000438_090 Hb_000438_090 Hb_000320_050--Hb_000438_090 Hb_000009_610 Hb_000009_610 Hb_000320_050--Hb_000009_610 Hb_003605_040 Hb_003605_040 Hb_000320_050--Hb_003605_040 Hb_164945_010 Hb_164945_010 Hb_000320_050--Hb_164945_010 Hb_010812_070 Hb_010812_070 Hb_000320_050--Hb_010812_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.1968 6.05615 58.3859 26.1127 8.3648 11.8356
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.530128 10.9048 0.553443 10.7911 0

CAGE analysis