Hb_000009_610

Information

Type -
Description -
Location Contig9: 608906-611848
Sequence    

Annotation

kegg
ID pop:POPTR_0007s11820g
description POPTRDRAFT_563047; hypothetical protein
nr
ID XP_012079144.1
description PREDICTED: uncharacterized protein LOC105639638 isoform X2 [Jatropha curcas]
swissprot
ID Q96GN5
description Cell division cycle-associated 7-like protein OS=Homo sapiens GN=CDCA7L PE=1 SV=2
trembl
ID A0A067KA46
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12314 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61940: 609638-610184 , PASA_asmbl_61941: 610186-611584
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000009_610 0.0 - - PREDICTED: uncharacterized protein LOC105639638 isoform X2 [Jatropha curcas]
2 Hb_004800_150 0.1220337116 transcription factor TF Family: SNF2 PREDICTED: ATP-dependent DNA helicase DDM1 [Jatropha curcas]
3 Hb_011344_070 0.1328951741 - - PREDICTED: non-specific lipid-transfer protein [Jatropha curcas]
4 Hb_010812_070 0.149162104 - - PREDICTED: LOW QUALITY PROTEIN: protein NETWORKED 4A [Jatropha curcas]
5 Hb_000320_050 0.1512404323 - - bcr-associated protein, bap, putative [Ricinus communis]
6 Hb_004957_020 0.1562241007 - - conserved hypothetical protein [Ricinus communis]
7 Hb_164945_010 0.1576013588 - - PREDICTED: DNA primase small subunit [Jatropha curcas]
8 Hb_000122_010 0.1587021355 - - amino acid transporter, putative [Ricinus communis]
9 Hb_002600_130 0.158779572 - - PREDICTED: uncharacterized protein LOC105646808 [Jatropha curcas]
10 Hb_005144_210 0.15946531 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000139_220 0.1602241684 - - leucine rich repeat-containing protein, putative [Ricinus communis]
12 Hb_005901_030 0.1606391358 - - PREDICTED: phragmoplast orienting kinesin 2 isoform X1 [Jatropha curcas]
13 Hb_001369_470 0.1606800753 - - PREDICTED: monocopper oxidase-like protein SKS1 [Jatropha curcas]
14 Hb_000940_050 0.1608875455 - - hypothetical protein JCGZ_19588 [Jatropha curcas]
15 Hb_010381_010 0.1620132487 - - WD-repeat protein, putative [Ricinus communis]
16 Hb_163591_010 0.1623975944 - - PREDICTED: amidase 1-like isoform X2 [Populus euphratica]
17 Hb_000331_140 0.1672550358 - - PREDICTED: cycloeucalenol cycloisomerase [Jatropha curcas]
18 Hb_161568_010 0.1680460936 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
19 Hb_001307_190 0.1683265894 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
20 Hb_001195_120 0.1687038494 - - oxidoreductase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000009_610 Hb_000009_610 Hb_004800_150 Hb_004800_150 Hb_000009_610--Hb_004800_150 Hb_011344_070 Hb_011344_070 Hb_000009_610--Hb_011344_070 Hb_010812_070 Hb_010812_070 Hb_000009_610--Hb_010812_070 Hb_000320_050 Hb_000320_050 Hb_000009_610--Hb_000320_050 Hb_004957_020 Hb_004957_020 Hb_000009_610--Hb_004957_020 Hb_164945_010 Hb_164945_010 Hb_000009_610--Hb_164945_010 Hb_004611_030 Hb_004611_030 Hb_004800_150--Hb_004611_030 Hb_163591_010 Hb_163591_010 Hb_004800_150--Hb_163591_010 Hb_009659_030 Hb_009659_030 Hb_004800_150--Hb_009659_030 Hb_004800_150--Hb_164945_010 Hb_004800_150--Hb_011344_070 Hb_011344_070--Hb_009659_030 Hb_000139_220 Hb_000139_220 Hb_011344_070--Hb_000139_220 Hb_000940_050 Hb_000940_050 Hb_011344_070--Hb_000940_050 Hb_075203_010 Hb_075203_010 Hb_011344_070--Hb_075203_010 Hb_000985_040 Hb_000985_040 Hb_011344_070--Hb_000985_040 Hb_003050_260 Hb_003050_260 Hb_010812_070--Hb_003050_260 Hb_001195_640 Hb_001195_640 Hb_010812_070--Hb_001195_640 Hb_003001_090 Hb_003001_090 Hb_010812_070--Hb_003001_090 Hb_000987_040 Hb_000987_040 Hb_010812_070--Hb_000987_040 Hb_000331_140 Hb_000331_140 Hb_010812_070--Hb_000331_140 Hb_000369_010 Hb_000369_010 Hb_010812_070--Hb_000369_010 Hb_000668_060 Hb_000668_060 Hb_000320_050--Hb_000668_060 Hb_000438_090 Hb_000438_090 Hb_000320_050--Hb_000438_090 Hb_003605_040 Hb_003605_040 Hb_000320_050--Hb_003605_040 Hb_000320_050--Hb_164945_010 Hb_000320_050--Hb_010812_070 Hb_005901_030 Hb_005901_030 Hb_004957_020--Hb_005901_030 Hb_000959_190 Hb_000959_190 Hb_004957_020--Hb_000959_190 Hb_003430_040 Hb_003430_040 Hb_004957_020--Hb_003430_040 Hb_003874_010 Hb_003874_010 Hb_004957_020--Hb_003874_010 Hb_000211_100 Hb_000211_100 Hb_004957_020--Hb_000211_100 Hb_000345_290 Hb_000345_290 Hb_004957_020--Hb_000345_290 Hb_000836_300 Hb_000836_300 Hb_164945_010--Hb_000836_300 Hb_000958_080 Hb_000958_080 Hb_164945_010--Hb_000958_080 Hb_000046_080 Hb_000046_080 Hb_164945_010--Hb_000046_080 Hb_007163_060 Hb_007163_060 Hb_164945_010--Hb_007163_060 Hb_005322_050 Hb_005322_050 Hb_164945_010--Hb_005322_050 Hb_083628_010 Hb_083628_010 Hb_164945_010--Hb_083628_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.89774 1.53041 6.60434 3.01458 2.02638 1.53101
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.24883 0.429872 0.734809 1.77771 0.344688

CAGE analysis