Hb_011344_070

Information

Type -
Description -
Location Contig11344: 44660-46434
Sequence    

Annotation

kegg
ID rcu:RCOM_1679880
description lipid binding protein, putative
nr
ID XP_012087118.1
description PREDICTED: non-specific lipid-transfer protein [Jatropha curcas]
swissprot
ID Q9FFY3
description Lipid transfer-like protein VAS OS=Arabidopsis thaliana GN=VAS PE=2 SV=1
trembl
ID A0A067K1E9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20770 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03998: 45597-46429 , PASA_asmbl_03999: 44703-46429 , PASA_asmbl_04000: 44678-46429
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011344_070 0.0 - - PREDICTED: non-specific lipid-transfer protein [Jatropha curcas]
2 Hb_009659_030 0.1008712633 - - PREDICTED: beta-galactosidase 17 [Jatropha curcas]
3 Hb_000139_220 0.1064699785 - - leucine rich repeat-containing protein, putative [Ricinus communis]
4 Hb_000940_050 0.1091394265 - - hypothetical protein JCGZ_19588 [Jatropha curcas]
5 Hb_075203_010 0.1216576152 - - PREDICTED: calcium-dependent protein kinase SK5 isoform X1 [Jatropha curcas]
6 Hb_004800_150 0.1229472706 transcription factor TF Family: SNF2 PREDICTED: ATP-dependent DNA helicase DDM1 [Jatropha curcas]
7 Hb_000985_040 0.1234733175 transcription factor TF Family: Orphans B-box type zinc finger protein with CCT domain isoform 1 [Theobroma cacao]
8 Hb_000002_120 0.1237847548 - - PREDICTED: uncharacterized protein LOC105782064 [Gossypium raimondii]
9 Hb_000371_010 0.1241382515 - - PREDICTED: probable Xaa-Pro aminopeptidase P isoform X1 [Jatropha curcas]
10 Hb_002255_040 0.1266640135 - - PREDICTED: biotin synthase [Jatropha curcas]
11 Hb_001662_040 0.1274547935 - - DNA helicase, putative [Ricinus communis]
12 Hb_000134_250 0.1322593305 - - protein with unknown function [Ricinus communis]
13 Hb_000009_610 0.1328951741 - - PREDICTED: uncharacterized protein LOC105639638 isoform X2 [Jatropha curcas]
14 Hb_001450_020 0.134743276 - - PREDICTED: pyruvate kinase isozyme A, chloroplastic-like [Jatropha curcas]
15 Hb_163591_010 0.1384755462 - - PREDICTED: amidase 1-like isoform X2 [Populus euphratica]
16 Hb_003849_040 0.1385584378 - - PREDICTED: serine/threonine-protein kinase AFC2-like [Jatropha curcas]
17 Hb_005649_100 0.1401933176 - - Ras-GTPase-activating protein-binding protein, putative [Ricinus communis]
18 Hb_004525_070 0.141840498 - - abhydrolase domain containing, putative [Ricinus communis]
19 Hb_004032_370 0.1425318122 - - pyrophosphate-dependent phosphofructokinase [Hevea brasiliensis]
20 Hb_002870_020 0.1459290036 - - PREDICTED: uncharacterized GPI-anchored protein At1g61900 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_011344_070 Hb_011344_070 Hb_009659_030 Hb_009659_030 Hb_011344_070--Hb_009659_030 Hb_000139_220 Hb_000139_220 Hb_011344_070--Hb_000139_220 Hb_000940_050 Hb_000940_050 Hb_011344_070--Hb_000940_050 Hb_075203_010 Hb_075203_010 Hb_011344_070--Hb_075203_010 Hb_004800_150 Hb_004800_150 Hb_011344_070--Hb_004800_150 Hb_000985_040 Hb_000985_040 Hb_011344_070--Hb_000985_040 Hb_009659_030--Hb_075203_010 Hb_000134_250 Hb_000134_250 Hb_009659_030--Hb_000134_250 Hb_000994_020 Hb_000994_020 Hb_009659_030--Hb_000994_020 Hb_009659_030--Hb_000940_050 Hb_005833_030 Hb_005833_030 Hb_009659_030--Hb_005833_030 Hb_000077_120 Hb_000077_120 Hb_000139_220--Hb_000077_120 Hb_002291_060 Hb_002291_060 Hb_000139_220--Hb_002291_060 Hb_000139_220--Hb_000940_050 Hb_009449_060 Hb_009449_060 Hb_000139_220--Hb_009449_060 Hb_172257_010 Hb_172257_010 Hb_000139_220--Hb_172257_010 Hb_000589_190 Hb_000589_190 Hb_000139_220--Hb_000589_190 Hb_001824_030 Hb_001824_030 Hb_000940_050--Hb_001824_030 Hb_005649_100 Hb_005649_100 Hb_000940_050--Hb_005649_100 Hb_016448_010 Hb_016448_010 Hb_000940_050--Hb_016448_010 Hb_004096_160 Hb_004096_160 Hb_000940_050--Hb_004096_160 Hb_002259_110 Hb_002259_110 Hb_075203_010--Hb_002259_110 Hb_075203_010--Hb_000134_250 Hb_000062_360 Hb_000062_360 Hb_075203_010--Hb_000062_360 Hb_054865_020 Hb_054865_020 Hb_075203_010--Hb_054865_020 Hb_004611_030 Hb_004611_030 Hb_004800_150--Hb_004611_030 Hb_163591_010 Hb_163591_010 Hb_004800_150--Hb_163591_010 Hb_004800_150--Hb_009659_030 Hb_164945_010 Hb_164945_010 Hb_004800_150--Hb_164945_010 Hb_000009_610 Hb_000009_610 Hb_004800_150--Hb_000009_610 Hb_003849_040 Hb_003849_040 Hb_000985_040--Hb_003849_040 Hb_002890_150 Hb_002890_150 Hb_000985_040--Hb_002890_150 Hb_010287_030 Hb_010287_030 Hb_000985_040--Hb_010287_030 Hb_000985_040--Hb_000077_120 Hb_048476_150 Hb_048476_150 Hb_000985_040--Hb_048476_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
88.6488 53.319 224.212 67.579 81.0908 54.1997
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
27.5717 17.8919 21.4922 77.6873 42.9658

CAGE analysis