Hb_004611_030

Information

Type -
Description -
Location Contig4611: 42469-54449
Sequence    

Annotation

kegg
ID rcu:RCOM_0963890
description structural maintenance of chromosomes 5 smc5, putative
nr
ID XP_002517770.1
description structural maintenance of chromosomes 5 smc5, putative [Ricinus communis]
swissprot
ID Q9LFS8
description Structural maintenance of chromosomes protein 5 OS=Arabidopsis thaliana GN=SMC5 PE=2 SV=1
trembl
ID B9RVK1
description Structural maintenance of chromosomes 5 smc5, putative OS=Ricinus communis GN=RCOM_0963890 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43733: 52266-52737 , PASA_asmbl_43734: 52769-52962
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004611_030 0.0 - - structural maintenance of chromosomes 5 smc5, putative [Ricinus communis]
2 Hb_004800_150 0.0917234673 transcription factor TF Family: SNF2 PREDICTED: ATP-dependent DNA helicase DDM1 [Jatropha curcas]
3 Hb_000181_290 0.1115545844 - - hypothetical protein POPTR_0001s41000g [Populus trichocarpa]
4 Hb_073171_090 0.1201098398 - - PREDICTED: uncharacterized protein LOC105631539 [Jatropha curcas]
5 Hb_005322_050 0.1271783125 - - hypothetical protein POPTR_0009s02400g [Populus trichocarpa]
6 Hb_000302_170 0.1294855308 - - PREDICTED: dnaJ protein ERDJ2A-like [Jatropha curcas]
7 Hb_007163_060 0.1334320288 - - PREDICTED: protein RMD5 homolog A [Jatropha curcas]
8 Hb_009659_030 0.1346280034 - - PREDICTED: beta-galactosidase 17 [Jatropha curcas]
9 Hb_010287_030 0.1347965991 - - conserved hypothetical protein [Ricinus communis]
10 Hb_164945_010 0.1352951594 - - PREDICTED: DNA primase small subunit [Jatropha curcas]
11 Hb_005833_030 0.1372020787 - - PREDICTED: uncharacterized membrane protein At1g16860 [Jatropha curcas]
12 Hb_007777_010 0.1411858604 - - PREDICTED: UPF0187 protein At3g61320, chloroplastic [Tarenaya hassleriana]
13 Hb_156635_020 0.1427841145 - - PREDICTED: L-lactate dehydrogenase B [Jatropha curcas]
14 Hb_016347_020 0.1437004965 - - PREDICTED: D-amino-acid transaminase, chloroplastic-like isoform X1 [Populus euphratica]
15 Hb_003891_070 0.1453191974 - - PREDICTED: uroporphyrinogen-III C-methyltransferase [Jatropha curcas]
16 Hb_009449_060 0.1454379668 - - PREDICTED: ubiquitin-like-specific protease 1D isoform X2 [Jatropha curcas]
17 Hb_010053_040 0.1474435786 - - PREDICTED: ras-related protein Rab11D [Jatropha curcas]
18 Hb_000300_550 0.1485728094 - - PREDICTED: uncharacterized protein At1g04910-like [Jatropha curcas]
19 Hb_000236_490 0.1498497504 - - 20 kD nuclear cap binding protein, putative [Ricinus communis]
20 Hb_163591_010 0.1502304339 - - PREDICTED: amidase 1-like isoform X2 [Populus euphratica]

Gene co-expression network

sample Hb_004611_030 Hb_004611_030 Hb_004800_150 Hb_004800_150 Hb_004611_030--Hb_004800_150 Hb_000181_290 Hb_000181_290 Hb_004611_030--Hb_000181_290 Hb_073171_090 Hb_073171_090 Hb_004611_030--Hb_073171_090 Hb_005322_050 Hb_005322_050 Hb_004611_030--Hb_005322_050 Hb_000302_170 Hb_000302_170 Hb_004611_030--Hb_000302_170 Hb_007163_060 Hb_007163_060 Hb_004611_030--Hb_007163_060 Hb_163591_010 Hb_163591_010 Hb_004800_150--Hb_163591_010 Hb_009659_030 Hb_009659_030 Hb_004800_150--Hb_009659_030 Hb_164945_010 Hb_164945_010 Hb_004800_150--Hb_164945_010 Hb_000009_610 Hb_000009_610 Hb_004800_150--Hb_000009_610 Hb_011344_070 Hb_011344_070 Hb_004800_150--Hb_011344_070 Hb_000181_290--Hb_073171_090 Hb_083628_010 Hb_083628_010 Hb_000181_290--Hb_083628_010 Hb_009222_070 Hb_009222_070 Hb_000181_290--Hb_009222_070 Hb_030736_060 Hb_030736_060 Hb_000181_290--Hb_030736_060 Hb_003910_010 Hb_003910_010 Hb_000181_290--Hb_003910_010 Hb_000059_200 Hb_000059_200 Hb_073171_090--Hb_000059_200 Hb_073171_090--Hb_005322_050 Hb_056987_010 Hb_056987_010 Hb_073171_090--Hb_056987_010 Hb_073171_090--Hb_007163_060 Hb_000300_550 Hb_000300_550 Hb_073171_090--Hb_000300_550 Hb_073171_090--Hb_000302_170 Hb_005322_050--Hb_000300_550 Hb_005322_050--Hb_000302_170 Hb_172257_010 Hb_172257_010 Hb_005322_050--Hb_172257_010 Hb_005322_050--Hb_007163_060 Hb_000958_080 Hb_000958_080 Hb_005322_050--Hb_000958_080 Hb_027654_020 Hb_027654_020 Hb_005322_050--Hb_027654_020 Hb_000302_170--Hb_000300_550 Hb_010287_030 Hb_010287_030 Hb_000302_170--Hb_010287_030 Hb_102438_030 Hb_102438_030 Hb_000302_170--Hb_102438_030 Hb_000102_050 Hb_000102_050 Hb_000302_170--Hb_000102_050 Hb_152910_010 Hb_152910_010 Hb_000302_170--Hb_152910_010 Hb_007163_060--Hb_172257_010 Hb_004223_110 Hb_004223_110 Hb_007163_060--Hb_004223_110 Hb_003746_030 Hb_003746_030 Hb_007163_060--Hb_003746_030 Hb_007163_060--Hb_000300_550 Hb_009449_060 Hb_009449_060 Hb_007163_060--Hb_009449_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.54988 1.19467 1.89363 1.56617 0.813399 0.647187
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.286089 0.277053 0.229992 0.943589 0.329569

CAGE analysis