Hb_009659_030

Information

Type -
Description -
Location Contig9659: 6265-17723
Sequence    

Annotation

kegg
ID cic:CICLE_v10024990mg
description hypothetical protein
nr
ID XP_012068968.1
description PREDICTED: beta-galactosidase 17 [Jatropha curcas]
swissprot
ID Q93Z24
description Beta-galactosidase 17 OS=Arabidopsis thaliana GN=BGAL17 PE=2 SV=1
trembl
ID A0A067KXB6
description Beta-galactosidase OS=Jatropha curcas GN=JCGZ_24761 PE=3 SV=1
Gene Ontology
ID GO:0004553
description beta-galactosidase 17

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63886: 9374-10371 , PASA_asmbl_63887: 10664-14373 , PASA_asmbl_63889: 15687-17465 , PASA_asmbl_63890: 15687-16012
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009659_030 0.0 - - PREDICTED: beta-galactosidase 17 [Jatropha curcas]
2 Hb_075203_010 0.0857627727 - - PREDICTED: calcium-dependent protein kinase SK5 isoform X1 [Jatropha curcas]
3 Hb_000134_250 0.0956209663 - - protein with unknown function [Ricinus communis]
4 Hb_000994_020 0.0998223063 - - methylenetetrahydrofolate dehydrogenase, putative [Ricinus communis]
5 Hb_011344_070 0.1008712633 - - PREDICTED: non-specific lipid-transfer protein [Jatropha curcas]
6 Hb_000940_050 0.1014035009 - - hypothetical protein JCGZ_19588 [Jatropha curcas]
7 Hb_005833_030 0.1106061707 - - PREDICTED: uncharacterized membrane protein At1g16860 [Jatropha curcas]
8 Hb_004267_060 0.1124657767 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
9 Hb_000260_770 0.1125134331 - - er lumen protein retaining receptor, putative [Ricinus communis]
10 Hb_000139_220 0.1173068854 - - leucine rich repeat-containing protein, putative [Ricinus communis]
11 Hb_002259_110 0.1192160593 - - PREDICTED: uncharacterized protein LOC105630166 [Jatropha curcas]
12 Hb_032823_020 0.1202146178 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000497_190 0.1207621988 - - sterol isomerase, putative [Ricinus communis]
14 Hb_001824_030 0.1215473847 - - plant sec1, putative [Ricinus communis]
15 Hb_004800_150 0.1217627074 transcription factor TF Family: SNF2 PREDICTED: ATP-dependent DNA helicase DDM1 [Jatropha curcas]
16 Hb_010287_030 0.1219025724 - - conserved hypothetical protein [Ricinus communis]
17 Hb_007777_010 0.1226946217 - - PREDICTED: UPF0187 protein At3g61320, chloroplastic [Tarenaya hassleriana]
18 Hb_001373_160 0.1231344433 - - hypothetical protein JCGZ_16907 [Jatropha curcas]
19 Hb_000062_360 0.1246815772 - - PREDICTED: DNA polymerase alpha subunit B [Jatropha curcas]
20 Hb_005323_010 0.1265946905 - - PREDICTED: uncharacterized protein LOC105642810 [Jatropha curcas]

Gene co-expression network

sample Hb_009659_030 Hb_009659_030 Hb_075203_010 Hb_075203_010 Hb_009659_030--Hb_075203_010 Hb_000134_250 Hb_000134_250 Hb_009659_030--Hb_000134_250 Hb_000994_020 Hb_000994_020 Hb_009659_030--Hb_000994_020 Hb_011344_070 Hb_011344_070 Hb_009659_030--Hb_011344_070 Hb_000940_050 Hb_000940_050 Hb_009659_030--Hb_000940_050 Hb_005833_030 Hb_005833_030 Hb_009659_030--Hb_005833_030 Hb_002259_110 Hb_002259_110 Hb_075203_010--Hb_002259_110 Hb_075203_010--Hb_000134_250 Hb_000062_360 Hb_000062_360 Hb_075203_010--Hb_000062_360 Hb_075203_010--Hb_011344_070 Hb_054865_020 Hb_054865_020 Hb_075203_010--Hb_054865_020 Hb_000134_250--Hb_000994_020 Hb_001373_160 Hb_001373_160 Hb_000134_250--Hb_001373_160 Hb_000260_770 Hb_000260_770 Hb_000134_250--Hb_000260_770 Hb_006501_010 Hb_006501_010 Hb_000134_250--Hb_006501_010 Hb_010287_030 Hb_010287_030 Hb_000134_250--Hb_010287_030 Hb_015026_100 Hb_015026_100 Hb_000994_020--Hb_015026_100 Hb_000046_600 Hb_000046_600 Hb_000994_020--Hb_000046_600 Hb_000994_020--Hb_000260_770 Hb_000994_020--Hb_006501_010 Hb_000302_170 Hb_000302_170 Hb_000994_020--Hb_000302_170 Hb_000300_550 Hb_000300_550 Hb_000994_020--Hb_000300_550 Hb_000139_220 Hb_000139_220 Hb_011344_070--Hb_000139_220 Hb_011344_070--Hb_000940_050 Hb_004800_150 Hb_004800_150 Hb_011344_070--Hb_004800_150 Hb_000985_040 Hb_000985_040 Hb_011344_070--Hb_000985_040 Hb_001824_030 Hb_001824_030 Hb_000940_050--Hb_001824_030 Hb_005649_100 Hb_005649_100 Hb_000940_050--Hb_005649_100 Hb_000940_050--Hb_000139_220 Hb_016448_010 Hb_016448_010 Hb_000940_050--Hb_016448_010 Hb_004096_160 Hb_004096_160 Hb_000940_050--Hb_004096_160 Hb_002687_060 Hb_002687_060 Hb_005833_030--Hb_002687_060 Hb_005833_030--Hb_000994_020 Hb_000297_030 Hb_000297_030 Hb_005833_030--Hb_000297_030 Hb_000890_160 Hb_000890_160 Hb_005833_030--Hb_000890_160 Hb_005833_030--Hb_000260_770 Hb_152910_010 Hb_152910_010 Hb_005833_030--Hb_152910_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.37421 9.83425 21.4762 9.51791 8.22834 4.90117
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.12507 2.03568 2.04947 11.4189 5.68157

CAGE analysis