Hb_000181_290

Information

Type -
Description -
Location Contig181: 236194-236640
Sequence    

Annotation

kegg
ID pop:POPTR_0001s41000g
description hypothetical protein
nr
ID XP_006370247.1
description hypothetical protein POPTR_0001s41000g [Populus trichocarpa]
swissprot
ID Q9LNN7
description Protein GRIM REAPER OS=Arabidopsis thaliana GN=GRI PE=1 SV=1
trembl
ID U5GVU9
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s41000g PE=4 SV=1
Gene Ontology
ID GO:0001101
description protein grim reaper-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17527: 235916-236041
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000181_290 0.0 - - hypothetical protein POPTR_0001s41000g [Populus trichocarpa]
2 Hb_004611_030 0.1115545844 - - structural maintenance of chromosomes 5 smc5, putative [Ricinus communis]
3 Hb_073171_090 0.1231155088 - - PREDICTED: uncharacterized protein LOC105631539 [Jatropha curcas]
4 Hb_083628_010 0.1425062455 - - PREDICTED: probable serine protease EDA2 [Jatropha curcas]
5 Hb_009222_070 0.1495179397 - - PREDICTED: xylosyltransferase 2 [Jatropha curcas]
6 Hb_030736_060 0.1501082024 - - PREDICTED: lysM domain-containing GPI-anchored protein 1 [Jatropha curcas]
7 Hb_003910_010 0.1522220083 - - PREDICTED: L-ascorbate oxidase homolog [Jatropha curcas]
8 Hb_164945_010 0.1546195099 - - PREDICTED: DNA primase small subunit [Jatropha curcas]
9 Hb_004800_150 0.156060387 transcription factor TF Family: SNF2 PREDICTED: ATP-dependent DNA helicase DDM1 [Jatropha curcas]
10 Hb_004355_040 0.1575685734 - - epoxide hydrolase, putative [Ricinus communis]
11 Hb_000580_030 0.1584716508 - - PREDICTED: probable protein S-acyltransferase 14 [Jatropha curcas]
12 Hb_000818_100 0.1589612085 - - PREDICTED: delta(24)-sterol reductase [Jatropha curcas]
13 Hb_000805_210 0.1597247289 - - PREDICTED: oxysterol-binding protein-related protein 3C-like [Jatropha curcas]
14 Hb_156635_020 0.161743005 - - PREDICTED: L-lactate dehydrogenase B [Jatropha curcas]
15 Hb_000012_210 0.1620356097 - - PREDICTED: serine hydroxymethyltransferase 3, chloroplastic [Jatropha curcas]
16 Hb_005322_050 0.1641450408 - - hypothetical protein POPTR_0009s02400g [Populus trichocarpa]
17 Hb_005833_030 0.167089334 - - PREDICTED: uncharacterized membrane protein At1g16860 [Jatropha curcas]
18 Hb_007163_060 0.1691944173 - - PREDICTED: protein RMD5 homolog A [Jatropha curcas]
19 Hb_002666_080 0.171936823 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
20 Hb_016347_020 0.1748913872 - - PREDICTED: D-amino-acid transaminase, chloroplastic-like isoform X1 [Populus euphratica]

Gene co-expression network

sample Hb_000181_290 Hb_000181_290 Hb_004611_030 Hb_004611_030 Hb_000181_290--Hb_004611_030 Hb_073171_090 Hb_073171_090 Hb_000181_290--Hb_073171_090 Hb_083628_010 Hb_083628_010 Hb_000181_290--Hb_083628_010 Hb_009222_070 Hb_009222_070 Hb_000181_290--Hb_009222_070 Hb_030736_060 Hb_030736_060 Hb_000181_290--Hb_030736_060 Hb_003910_010 Hb_003910_010 Hb_000181_290--Hb_003910_010 Hb_004800_150 Hb_004800_150 Hb_004611_030--Hb_004800_150 Hb_004611_030--Hb_073171_090 Hb_005322_050 Hb_005322_050 Hb_004611_030--Hb_005322_050 Hb_000302_170 Hb_000302_170 Hb_004611_030--Hb_000302_170 Hb_007163_060 Hb_007163_060 Hb_004611_030--Hb_007163_060 Hb_000059_200 Hb_000059_200 Hb_073171_090--Hb_000059_200 Hb_073171_090--Hb_005322_050 Hb_056987_010 Hb_056987_010 Hb_073171_090--Hb_056987_010 Hb_073171_090--Hb_007163_060 Hb_000300_550 Hb_000300_550 Hb_073171_090--Hb_000300_550 Hb_073171_090--Hb_000302_170 Hb_000805_210 Hb_000805_210 Hb_083628_010--Hb_000805_210 Hb_164945_010 Hb_164945_010 Hb_083628_010--Hb_164945_010 Hb_001623_110 Hb_001623_110 Hb_083628_010--Hb_001623_110 Hb_000836_300 Hb_000836_300 Hb_083628_010--Hb_000836_300 Hb_012760_030 Hb_012760_030 Hb_083628_010--Hb_012760_030 Hb_083628_010--Hb_009222_070 Hb_009222_070--Hb_000805_210 Hb_009393_200 Hb_009393_200 Hb_009222_070--Hb_009393_200 Hb_002615_070 Hb_002615_070 Hb_009222_070--Hb_002615_070 Hb_009222_070--Hb_001623_110 Hb_009247_010 Hb_009247_010 Hb_009222_070--Hb_009247_010 Hb_016347_020 Hb_016347_020 Hb_030736_060--Hb_016347_020 Hb_000684_080 Hb_000684_080 Hb_030736_060--Hb_000684_080 Hb_121089_030 Hb_121089_030 Hb_030736_060--Hb_121089_030 Hb_000963_040 Hb_000963_040 Hb_030736_060--Hb_000963_040 Hb_000261_210 Hb_000261_210 Hb_030736_060--Hb_000261_210 Hb_001227_130 Hb_001227_130 Hb_030736_060--Hb_001227_130 Hb_029695_050 Hb_029695_050 Hb_003910_010--Hb_029695_050 Hb_131035_010 Hb_131035_010 Hb_003910_010--Hb_131035_010 Hb_135757_010 Hb_135757_010 Hb_003910_010--Hb_135757_010 Hb_011930_150 Hb_011930_150 Hb_003910_010--Hb_011930_150 Hb_024879_010 Hb_024879_010 Hb_003910_010--Hb_024879_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.97341 1.8326 2.0886 3.11349 1.29988 0.779194
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.48726 0.255153 0.632002 1.28878 0.23197

CAGE analysis