Hb_000345_290

Information

Type -
Description -
Location Contig345: 255802-256857
Sequence    

Annotation

kegg
ID rcu:RCOM_1432010
description serine-threonine protein kinase, plant-type, putative
nr
ID XP_002512391.1
description serine-threonine protein kinase, plant-type, putative [Ricinus communis]
swissprot
ID Q9M092
description Wall-associated receptor kinase-like 17 OS=Arabidopsis thaliana GN=WAKL17 PE=3 SV=2
trembl
ID B9RF72
description Serine-threonine protein kinase, plant-type, putative OS=Ricinus communis GN=RCOM_1432010 PE=4 SV=1
Gene Ontology
ID GO:0004672
description serine-threonine protein plant-

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000345_290 0.0 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
2 Hb_001369_030 0.1189854617 - - PREDICTED: ceramide kinase isoform X1 [Jatropha curcas]
3 Hb_000062_360 0.1192289614 - - PREDICTED: DNA polymerase alpha subunit B [Jatropha curcas]
4 Hb_000212_300 0.1226565132 - - PREDICTED: thaumatin-like protein [Jatropha curcas]
5 Hb_001322_020 0.1269878985 - - PREDICTED: polycomb group protein VERNALIZATION 2-like isoform X2 [Populus euphratica]
6 Hb_006555_040 0.1286410154 - - PREDICTED: uncharacterized protein LOC105639405 [Jatropha curcas]
7 Hb_029622_030 0.1333924894 - - ankyrin repeat-containing protein, putative [Ricinus communis]
8 Hb_000684_100 0.1371938471 - - PREDICTED: cell number regulator 8 [Jatropha curcas]
9 Hb_004957_020 0.1374098098 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001930_030 0.1388073696 - - PREDICTED: 30S ribosomal protein S10, chloroplastic [Jatropha curcas]
11 Hb_011386_050 0.1404990689 - - PREDICTED: malonyl-CoA-acyl carrier protein transacylase, mitochondrial [Jatropha curcas]
12 Hb_155025_010 0.1409734324 - - PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
13 Hb_000424_070 0.141888157 - - PREDICTED: serine/arginine repetitive matrix protein 2-like [Jatropha curcas]
14 Hb_002255_040 0.142879264 - - PREDICTED: biotin synthase [Jatropha curcas]
15 Hb_010080_010 0.1461122829 - - PREDICTED: uncharacterized protein LOC105635247 [Jatropha curcas]
16 Hb_030131_020 0.1474733602 - - Carboxypeptidase B2 precursor, putative [Ricinus communis]
17 Hb_000123_140 0.1477135722 - - PREDICTED: 21 kDa protein-like [Populus euphratica]
18 Hb_001102_190 0.1480814087 - - PREDICTED: uncharacterized protein LOC105112724 [Populus euphratica]
19 Hb_000364_100 0.148120258 - - PREDICTED: uncharacterized protein LOC105639739 [Jatropha curcas]
20 Hb_000211_040 0.1484700255 - - PREDICTED: uncharacterized protein LOC105629236 [Jatropha curcas]

Gene co-expression network

sample Hb_000345_290 Hb_000345_290 Hb_001369_030 Hb_001369_030 Hb_000345_290--Hb_001369_030 Hb_000062_360 Hb_000062_360 Hb_000345_290--Hb_000062_360 Hb_000212_300 Hb_000212_300 Hb_000345_290--Hb_000212_300 Hb_001322_020 Hb_001322_020 Hb_000345_290--Hb_001322_020 Hb_006555_040 Hb_006555_040 Hb_000345_290--Hb_006555_040 Hb_029622_030 Hb_029622_030 Hb_000345_290--Hb_029622_030 Hb_000086_430 Hb_000086_430 Hb_001369_030--Hb_000086_430 Hb_001369_030--Hb_000212_300 Hb_001369_030--Hb_000062_360 Hb_001009_120 Hb_001009_120 Hb_001369_030--Hb_001009_120 Hb_004267_060 Hb_004267_060 Hb_001369_030--Hb_004267_060 Hb_000836_540 Hb_000836_540 Hb_001369_030--Hb_000836_540 Hb_000062_360--Hb_000212_300 Hb_000062_360--Hb_001322_020 Hb_000062_360--Hb_004267_060 Hb_172257_010 Hb_172257_010 Hb_000062_360--Hb_172257_010 Hb_003470_040 Hb_003470_040 Hb_000062_360--Hb_003470_040 Hb_027380_210 Hb_027380_210 Hb_000212_300--Hb_027380_210 Hb_011671_110 Hb_011671_110 Hb_000212_300--Hb_011671_110 Hb_015026_020 Hb_015026_020 Hb_000212_300--Hb_015026_020 Hb_005941_020 Hb_005941_020 Hb_000212_300--Hb_005941_020 Hb_000959_220 Hb_000959_220 Hb_001322_020--Hb_000959_220 Hb_001322_020--Hb_003470_040 Hb_029695_080 Hb_029695_080 Hb_001322_020--Hb_029695_080 Hb_003506_030 Hb_003506_030 Hb_001322_020--Hb_003506_030 Hb_014231_020 Hb_014231_020 Hb_001322_020--Hb_014231_020 Hb_000140_440 Hb_000140_440 Hb_006555_040--Hb_000140_440 Hb_001930_030 Hb_001930_030 Hb_006555_040--Hb_001930_030 Hb_004994_080 Hb_004994_080 Hb_006555_040--Hb_004994_080 Hb_007263_010 Hb_007263_010 Hb_006555_040--Hb_007263_010 Hb_002255_040 Hb_002255_040 Hb_006555_040--Hb_002255_040 Hb_011386_050 Hb_011386_050 Hb_006555_040--Hb_011386_050 Hb_029622_030--Hb_015026_020 Hb_000928_250 Hb_000928_250 Hb_029622_030--Hb_000928_250 Hb_000424_070 Hb_000424_070 Hb_029622_030--Hb_000424_070 Hb_003106_200 Hb_003106_200 Hb_029622_030--Hb_003106_200 Hb_029622_030--Hb_000212_300
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.543214 1.11528 3.71332 0.548568 0.628703 0.589259
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.615838 0.335339 0.275277 0.70335 0.918147

CAGE analysis